BtaEX0041475 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030951 | ZNF655
Description
Bos taurus zinc finger protein 655 (ZNF655), mRNA. [Source:RefSeq mRNA;Acc:NM_001075261]
Coordinates
chr25:37385101-37393494:-
Coord C1 exon
chr25:37393332-37393494
Coord A exon
chr25:37391567-37391693
Coord C2 exon
chr25:37385101-37385205
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCCAGGCTGTGTTATTTCAGGAA
3' ss Score
5.84
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TGATGGTCATTGTCCTCCAGAACAGGGATGGAGGAGGTATCAGCCCAGGAAGCAGCAGAATCTCCAGTGGTCCAGTTTCAGTCCTTGGAGACCCACTCTGAGGGTCTGTCCCCAGAGCCTCAGTTCGTGCAGGACACCGACATGGAACAGGGACTCACTGGGG
Seq A exon
GAATTTGTGACATTCGAGGATGTGGCTGTGCACCTTACTCGAGAGGAATGGGGATGCCTGGACCCTGTTCAGAGGGCTCTCTACAGAGAAGTGATGTTAGAGAATTATGGGAACCTGGTCTCACTGG
Seq C2 exon
GATTTCCAATTTTCAAGCCTGATGGGATCTCCCAGCTGGAACAAGATCTACAAGTCTTTGATCTGGAAACTAAGAATAGAGAAGTCTTAAGAGATGACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030951_MULTIEX1-2/7=C1-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACAGGGATGGAGGAGGT
R:
CTGAGCAGTCATCTCTTAAGACT
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development