BtaINT0165936 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030951 | ZNF655
Description
Bos taurus zinc finger protein 655 (ZNF655), mRNA. [Source:RefSeq mRNA;Acc:NM_001075261]
Coordinates
chr25:37389787-37391693:-
Coord C1 exon
chr25:37391567-37391693
Coord A exon
chr25:37390613-37391566
Coord C2 exon
chr25:37389787-37390612
Length
954 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGGCTCTTTGATCTTTGTAGGCA
3' ss Score
7.72
Exon sequences
Seq C1 exon
GAATTTGTGACATTCGAGGATGTGGCTGTGCACCTTACTCGAGAGGAATGGGGATGCCTGGACCCTGTTCAGAGGGCTCTCTACAGAGAAGTGATGTTAGAGAATTATGGGAACCTGGTCTCACTGG
Seq A exon
GTAAGGATTGCCTTTCCTATTATTCAGTTTACCTATTAGGGTTTCTTTACTTCCTTGTTTTTGAGTAGGTATGAGGTCTCTGAGTGGGGCTCAAATTCCAGGTCTTAGAACCTCTTGAGACCTCAGTCTTTAAGGTCATCTCCTCTGGGAGTGGGTTTCCTTTGGGGATGTCAAGAGGAGACATTCTACTCCTTATCCTCAGTTAACGTTTACTGCTTTTGTGGGACATCTGTTCCCTGTTACTAAAGGGAAACTTGCTGGTGCTTTGCGAGTTCTCAATTTCCGTATCTTTCCCTTTTTTATGAGAGGGACTCTAGGGCCTCCCAACCCACAACCAGACACTTTTCTTCCTGGTAATTCAGTGCCCCTGTATCTGAGAGTTTCCCATTTTTCTTGGAAGAAGAAATGCCTTTTTTTTTTTTTCAAGATAGGCTAAAATCTTCATTGAGTAATCCCTCACCTCTTAAGACCCCTTAATTCATCTGCAAGCAGGCAGAATTTCAGAGGCTTGATCTCAAGGCATGACTTACTGCCAGTACATTTCAGTGAGTCATCCAGACAGTAATCCCTGCTTCACCCGAGCAGTAGTGTCTCACACTTAGACCAAGTCTCTCCTTTGTCATTTGGATGGTGCAGTTGGCAGCTGAGATGAGGCAACTTGTAGTGCTCTAGAGAAGCATCAGGGGGAGCTGCCAGCACCCGCCTTGGTGTGAACATTGCTCCTTTTCCTCTTTCTTTTTTGGCCTGTCTCTGCTACTCTTTTCTTTGTTATGTAAGTACTTAATCACACTCTTTCTTTTCTTTCTCTTTTTTTTTCTTTTTTGCTTTGCCTGTGCTGGTGGCATCCAGGGTGGTGTTTTGTCTCCTTGATTAATTCTTGTCTGTGGGGAGGCAGCCTGCCCGCTGGGAAGGTTTGTAGTGTGTTTTCCATTCCTGGCTCTTTGATCTTTGTAG
Seq C2 exon
GCATACTTCTCCGCCTTCCCACCACCCGGATTCATAGTGTGAATTCCTGCCCGGCCCTGAGTCATACCCAGGCAAGTGCTTTCTCTGGAGAAACACTTGCCATCCTTTCAGCAGGAATCTCCAGGAGATGGCCCAGGTGTCGGCTTCCCATCGATAGTGCTCGTCCCCGCTCGGAAGCTCCTTTTCCACGATTGTGAGATCTTACACTTGATTGATGGAGTAGATGTTTCCCAGGAGGCTACCACTGTGTAAAATTGCAGCTCCTCAAATCACCTTTGATAAATTTCCAAGGGCCAAGGATGCCCTCCGTTGCAACCAGAATTTTGAACCTTGAATTTTGAGTTCATTCAGAAGCCATGGTTGGTGGTCATCGACTTGTGTTCTCAGAAACCACAGAGTTCGACTCCAGCTCTTCAGTTATGACCTTTCCATGTTATTCTAGACTGTGGAACACATGCTATGTGCCCCTCCTTTTCCATAGTGAACACAAACTGCCCCATCTGTTGCGTGAATCTCCTGAGACCCCTGGGCCTTCCTCATGTTTAACATTCTAGTCTTTTCCTTCCTTTAAATCCCTGTGACCCCCTCCAGGGTCCTGTCTTTGTCTCCTTTATTCTTTACAGTATTGTATAGATTGATGCATTTATATAATCCTCCTGGATCAAGTGTTCCTTAAAGGCTCTTTGATGGAGGGCAAATGGGAGGGCAAAAGAATTCAGGTTATTTCAGGCTATTAAATCCAATGTATATTTAACAACTTGTAAATTACAAAGTGATATGTAATTGTAAATTACTGTTAATTTTACCTAATAATTACATAATTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030951:ENSBTAT00000025885:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGCACCTTACTCGAGAG
R:
TACACAGTGGTAGCCTCCTGG
Band lengths:
354-1308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]