MmuINT0179667 @ mm9
Intron Retention
Gene
ENSMUSG00000007812 | Zfp655
Description
zinc finger protein 655 [Source:MGI Symbol;Acc:MGI:1919861]
Coordinates
chr5:145996606-145999191:+
Coord C1 exon
chr5:145996606-145996732
Coord A exon
chr5:145996733-145997918
Coord C2 exon
chr5:145997919-145999191
Length
1186 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGGCTCTTTGATCTTTATAGGCA
3' ss Score
7.85
Exon sequences
Seq C1 exon
GAGTTTGTGACATTCGAGGATGTGGCTGTGCATCTTACACGAGAGGAGTGGGGATGCCTGGACCCTGTTCAGAGGGAGCTCTACAGAGAAGTGATGTTAGAGAATTATGGAAACGTGGTCTCACTGG
Seq A exon
GTAAGGACCCTCCTGTTGATCAACTTACCTGTTTGGATTTCTTTCTGAGTAGGTGTGAGGTTTTTTAGGTAGTCAGTAGAGTGTGCCCAGTTAACACAGAACCTCTCAGCCCTCCATCTTTAAGGTCCTTTCCTTGGGGGTGGGGGTGGAGGTAAATTGAAGGTTACTTTGGGTTATCAGGAGGAGACCGTTATCCTTATCCCCAGTTTGTACTTCTTGCTTTTGTGGGACATCAGTTTCCTGTTAGGAAAGAGAAACTTGGTTGTGCTTTGGCTAAATTCTCCCTTTCTTTTCTTTTCTCTCCTCTCTCCCCTCTTCCCCTTCCTCTCTCTCCCCTCTCTCTCTCCCCTCTCTCTTCTCCCTCCCCCCCCCCCCTTTAAATAGTCATAAGGATCTTCCCAACCCCTAGCTGGACTCTGTTCTGATCCCTTTGTGTATCTGAGATATTTTCCATTAAAGAAATACATTTAAAAGACAGGCTAAAATCTCTCTTGATGATGAGTCTCACTTTTTTGAGATTCTCAAACTCTTCTCCAAACAGGCAGGTTTGAGAGACTTCATTTAAAGGTGGGACTCACTGTCTGCCATTGGAGTGCATCACCTAGGTGGTGATCCAAGTAACCGTAACCCAGCACCAGAAGGCTCAGGATGTCCCCTGCTGTCTTCAGACACACCAGAAGAGCGCATCAGCTCTCATTACAGATGGTTGTGCACCACCATGTGGGTGCTGGGATTTGAACTCAGGACCTCTGGAAGTGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAACCCTAGGCTAAATTCTTAAATTACGATTCCTTATTTTAAGGATACCTGAGATTAGGCAACCTATAGTGTTGTTGAGAAATACCCCTGAGGAGGGACAGGGCTGTTGGCAGTCTCCTTGAGCTTTGTCATCTTGTCTGCTGCCCTCACTGCAGTTTTTTAGCCTGTCTTTGATCTTGCATACACTCTTTGTGTATTTACATCTATAACCTCCGCCCCCTTCCCCACCTATTTTTTGTTTTTTTTTTTTTTGTTTGTTTTTTTTTTTTTTTTTAATTTTCCTGATTACATGCTAGATTTAAGACATTTTCTTACATGTGGGAGACAGTTTACTCATTGGCTCATTGGGAAGGTTTTTAGTATGTTTTCCATTCCTGGCTCTTTGATCTTTATAG
Seq C2 exon
GCATACTTCTCCGCCTTCCCACCACCCGGATTCATTGTGTGAATTCCTGCCCAGCCCTGAGTCATACCCAGGCAAGTGCTTTCTCTGGAGAAACACTTGCAGTCCTTACGGCAGGAATCACCAAGAGATGGCCCAGGGATCGGCTTTCCATCGGGAGTGCTCATCCCAGCACGGAAACTCCTTTTCCAAGATTGTAAGATATCATACTTGGTTGATGGAACATATGTTCCTTGGGATGCCACCATTATGTAAAGTTGCTGCTCCCTCCCTAAGTGACATTTGGTGAATCTCTAACATGGAAGCCTTCCTTATGATCACGTGCATTTGGAACTCCGTTCATTCATAAACCACACTTGGTGGTCAGCTACTTGTGTGAAATGCCACAAAGCTCACTCTTTTCAGTTGCCATCTTTTCCTGTTATTTTAGAGTAGGGATCAGATGCTGTGTGCTCTTTCTAGCAGTAAGTATAGCCTGCCCACTGTGATGCCTCACTGTGTGACCTCTCACTTGTGTGACCCCCAGACTTCTCTCATGTTTGGTATCATTTTTTTCTTCCTTTAAAGTCCTGTCTTCTTGTACCTGATTTGTTGTGGTACCAAACCAATTGCTGTATTTATATTACCTTTCCTATTAAGTGTTCTTAATGCTGTCTTTGATAGAGGGGAAGTAGGGGGGACAGAAACTAAATAGTTCAGGGCATCAAAATGGATGTATTTTTAAAAGCTTTGTAAATTGTAAAATGATCTATATAATTGTAAACTACTGTTAATTTTACCTAATACAGAATTTCCAACAGTTCACTTGTGTACTTTTTGTAGTAAAGAAATTTTGTAGTATTTTAACTCAAGCTTATAATATTCTACCAAGTGGAACTTTACCTCATTTTATCTTGTCATCTTTTCACACACAAAGGACACACATACATGCATACCCGCATAAACTATAAGAAACCCTCCTACACTACCCAGCTTGCTTTTGTGACTGAGCCAGCACATCCTTAGCAACTGTTTTAACATCCTTGGGAATTCATTTTATCTTTGTGGGTCCACCATACTTCATTTGAAATGTAAGGTTAAATTAAGTGTTTACTAATTTTATTTAGTGTTTGGGGTTAAACATAAGACCTTTATAATTCAGTCCATGGCTTAGTCTCTTTTTTCCAATTCATGTATTTCCCATGGCTGTATTTGTATTTATCACAGGCACCAAAAGAGTAGTCCCTTGATTAAATGTTTGCACTAGGCAGCAGTAAATAAATAAATGGCTGAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007812-Zfp655:NM_001083958:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGTGCATCTTACACGA
R:
AATGGTGGCATCCCAAGGAAC
Band lengths:
352-1538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: