BtaEX0041476 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030951 | ZNF655
Description
Bos taurus zinc finger protein 655 (ZNF655), mRNA. [Source:RefSeq mRNA;Acc:NM_001075261]
Coordinates
chr25:37385101-37393494:-
Coord C1 exon
chr25:37393332-37393494
Coord A exon
chr25:37390542-37390612
Coord C2 exon
chr25:37385101-37385205
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTTGATCTTTGTAGGCA
3' ss Score
7.72
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TGATGGTCATTGTCCTCCAGAACAGGGATGGAGGAGGTATCAGCCCAGGAAGCAGCAGAATCTCCAGTGGTCCAGTTTCAGTCCTTGGAGACCCACTCTGAGGGTCTGTCCCCAGAGCCTCAGTTCGTGCAGGACACCGACATGGAACAGGGACTCACTGGGG
Seq A exon
GCATACTTCTCCGCCTTCCCACCACCCGGATTCATAGTGTGAATTCCTGCCCGGCCCTGAGTCATACCCAG
Seq C2 exon
GATTTCCAATTTTCAAGCCTGATGGGATCTCCCAGCTGGAACAAGATCTACAAGTCTTTGATCTGGAAACTAAGAATAGAGAAGTCTTAAGAGATGACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030951_MULTIEX1-3/7=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.015 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACAGGGATGGAGGAGGT
R:
GGAGATCCCATCAGGCTTGAA
Band lengths:
178-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development