BtaINT0165934 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030951 | ZNF655
Description
Bos taurus zinc finger protein 655 (ZNF655), mRNA. [Source:RefSeq mRNA;Acc:NM_001075261]
Coordinates
chr25:37392087-37393494:-
Coord C1 exon
chr25:37393332-37393494
Coord A exon
chr25:37392173-37393331
Coord C2 exon
chr25:37392087-37392172
Length
1159 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
GCTCCTTTCTCCTCCCTCAGCTC
3' ss Score
8.92
Exon sequences
Seq C1 exon
TGATGGTCATTGTCCTCCAGAACAGGGATGGAGGAGGTATCAGCCCAGGAAGCAGCAGAATCTCCAGTGGTCCAGTTTCAGTCCTTGGAGACCCACTCTGAGGGTCTGTCCCCAGAGCCTCAGTTCGTGCAGGACACCGACATGGAACAGGGACTCACTGGGG
Seq A exon
GTAAGGCAGAGAGAACACTTCCATCCAGGAGAATGGGAATGTAGAGGGGCTCCTGGGCCTGGGATGAGAGAGACCAGGGGCTTCAATGAGAGGATGGCCCCTAGAGGGAGGTCTGGAAGGGAGGGACAGATGTGGCTCAATTCAGTCCTGATCGGGGCCCCTCTGTGGAGGTCAGCCTGTCCTTTAATAGGCAGAGTGGTCTTCACTCACTCTATTCAGGCTTTTTTCTTTCATGTAATTTTCACTTCATGCCAGTTACCACATAAGTTAGAAGAAATGCTGCTTTTGCCACCCCTCACAGTCCTTGCCTCGCTTTCACTTCCTCTTAGATTTAGGACCTGTCCCTACCCTCTGTTTCTTTAACTTAAGTTTCTTCCCTCCTTGACCTTTTGGGCTTTACCAGCTGCCATTATGTTGCAACTGCAGTGTTTTTGACTGCTCTAATTTTGATCAAGAAAGCAACCATTTAATTCCTTGGTTGAGCCCAGGGCTTGGAGCAATGTATACATATCACATACAGACTGTAAAATAACATTTTTATGTGTTATAGAGATAGGTTGATCTGTCTTGTACTCCCTTTGTTTTGTATGAAGTTTGAGATTTACTTGTGGCCAACTGCAGTGCCTGAAATAACCTGTGTGTCATGAACACCGACCGAATGCCTTTTAAGTGCTGTGGGGCATTGTGCTAGTGTAGAAAGGATTATGAGGAAACAGATGACCATTCCTTATTCTTGGGGGCTTTACACACTGGTTGCAGAGACAGTGCTCATTCTCAAAAGTTTACAGAGCAGTGTCTGAGAGAGGGTCAGAAGTCTACTAAATAACCATGGCCTTGGATGAGTCACTGCGAACCTTTATGCTTGGCTTTGCCATCTGCAAAACAGGTAATGGTGCTCACTTTTTTGACATGACATTCATGTCATGACATGGGGGTATAGTGCAATATGAGATTTCATAATAAAATCCTGAATCATGGGTCTAAACACGTGGAAGGAGGGCATGCAGGTGTTGAGATGGTGCAGGACAAACTCAGTATCTGATAAACATTCATTGGTTTTGCTGTAATGTCGATGTGAAGAAGGGTCCCACTGACTCTCTTTTGTGAGGGCACCCTGGGAAGGGCTGCTCTCACTCTTGGCTCCTTTCTCCTCCCTCAG
Seq C2 exon
CTCCACCTGTTCCCCAGGTGTCTTCTCTTCCCCACGAGGGAAGCCCAGGAGACCAGGCAGCTGCGCTCCTGACAGCCAGGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030951:ENSBTAT00000025885:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=NA C2=0.724
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATTGTCCTCCAGAACAGG
R:
CTGGCTGTCAGGAGCGCA
Band lengths:
238-1397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]