MmuINT0179665 @ mm9
Intron Retention
Gene
ENSMUSG00000007812 | Zfp655
Description
zinc finger protein 655 [Source:MGI Symbol;Acc:MGI:1919861]
Coordinates
chr5:145994310-145996260:+
Coord C1 exon
chr5:145994310-145994471
Coord A exon
chr5:145994472-145996174
Coord C2 exon
chr5:145996175-145996260
Length
1703 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
GCTCCTTTCTCCTCCCTCAGCTC
3' ss Score
8.92
Exon sequences
Seq C1 exon
TGATGGTCATTGTCCCCTGAACAGGGATGGAGGAGGTAACATCCCAAGAAGCCGCAGAGTCACCCAGGGGCCACTTCCAGCCTTTGGAGAACCAGTCTGAATGTCTTTCCCCAGAGCTTCGGTTTCTGCAGGACACGGACATGGAGCAGGGATTCAGTGGGG
Seq A exon
GTAAGGCAGAGACCACACTTTCTTCAAGGAGAATGGGAATAGTAAGGGGCCCTGGCCTGACATGAGAGAGGCCAGGGTCTTGAATAAGAAGGTGGGCCTTAGTGGAAGAACTGGAAGGGCGTGGCAGGTGTGAGTCCTTGGCTTGGGCCCTGTGGTTAGGGTAGCTAGCCTGTCTGTAATCCGCCCATCACCCTGCTCTGGCCTTGAGAATATGAGCTTCACTGCAGACACCACAACCAGAATGACTTCTAACAAAGGCTGCTTTTGCCATGTCTCACTAGCTTACCTAACGCAGGCCTCGGGGACTCCCTGGGTTCTCTTCAGTCTGCCTCCTCTCCTGGTGATCTAGTGTGATTTGCTACCTGCCATTCTTTTGCAACTTCAGTGTTCGTGAATAATCCAATTTTGGTCAAGAAAGCAACCATTTAATTTCCTGTTTGAACACAGTGTCTCTTTACATGCACAGATGTTACATCATATTAACTATCTATTCACATACATATATTAAATAGGTAAGTGTTTCCTCCCCTTGAAATAGGATCCTGCTAATGTATAGGTAGCCCTGGCTGGCCTAGTACTATGCGGCCCATGATTTGAATGAATCTTGTCTCGGCCCCCCAGCTACATTGGGAATGTAGGCATACAGCATCATACTTAGCTGCTGGTTTTATTATGTAAGAACTATGTCGTAGTTCTTATAGATCAGCACCAGTGCCTGAAGGAACTTGTATGTCAGCAACACAGATGGAGTACCATTATGTGGAGGGTACTGTGTGGGACATTGTTGGAGGGTGTAAAGGATTGTGAGGAAACATGACTGTTTTTGTTTCTACAAGCCGCACACAATAGCTTGCAGAAATAGTGCCCAATAATAACATGAAGGCAGAATGATGTTTATAGTAAATGGTATCTGGAAAAATGTCAGAAGTTTGCTGAAGACCCTGGCCCTATCATCAAATCCTTCAACTTTTTTGTGTTGTTTGGGTCTCTCTGCATAGCCCTGGTTGTCCTGGAATTTGCTAGGCCAGTCTGGCCTTAAAGTCAAAGAGATCCACCTGCTTCCACCTCCTGAGTGCTGGCATTAAAGGCTTACACCACCACACCCAGTCCCCTTCAACTCTTCTTCAGAGCCTTAATGTAGAGCAGGTTGGCATTGGACTGCTATGCCTTGGTGACTGAACTTCTGATCCTTCTATATCCACCTAGGTGCTGAGATTACAGTTGTGTGACACCTTGCCCACTAGATGGTGCTGGGGATCAAACCCAGAGCATCATGCATGCCAAGCAAGCACTCCACCAACTGAGCTATGTCTTCAGGCTTCTTTTTGCTCTTGTTTCTGGTTTTTGAGACCACATTTTTCACTCTGTAACCCAGGCTGGCCAGGAAATGCTGTCTGTCTGTCTGTCTGTTTTGCTTTGCTCATCACAACAGGTATAATGCTTGCCCTTCTATAGAAGGAATGTCATGCCATGAGGATTAAGTGCGATTCCTAGTAAAGTCCATATTACAGTCCTCAGTCTGTGTAAGTAGGAGCAGCTCCCAAGGAGGAGTGGGCATACCTGAGACCTGGTAAATGTTGACTTTACTGGAACACTGACGTGAAGGAGGATGCAACAGACATACCTTGGGCAGGAGAAGTGTTCTGAAAAGGGAGCCCTGTGGAGGGGCTGCTCTCACTCTTGGCTCCTTTCTCCTCCCTCAG
Seq C2 exon
CTCCACCTGTTCCCCAGGTGCCTGCTCTTCCCCATGAGGGAAGCCCAGGAGACCAGGCAGCTGCGCTCCTGACAGCCAGGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007812-Zfp655:NM_001083958:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=NA C2=0.690
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCATTGTCCCCTGAACAG
R:
CTGGCTGTCAGGAGCGCA
Band lengths:
238-1941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: