HsaINT0188023 @ hg38
Intron Retention
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:HGNC:30899]
Coordinates
chr7:99560533-99564703:+
Coord C1 exon
chr7:99560533-99560695
Coord A exon
chr7:99560696-99563862
Coord C2 exon
chr7:99563863-99564703
Length
3167 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TGGCTCTTTAATCTTTGTAGGCA
3' ss Score
7.37
Exon sequences
Seq C1 exon
TGATGGTCATTGTCCTCCAGAGCAGTGATGGAGGAAATACCAGCCCAGGAAGCAGCAGGGTCACCAAGGGTCCAGTTTCAGTCTTTGGAGACCCAGTCTGAGTGTCTGTCCCCAGAGCCTCAGTTTGTGCAGGACACCGACATGGAACAGGGACTCACTGGGG
Seq A exon
GTAAGGCAGAGAAAGCACTTCCGTCTGGGAGAGTGGGAGTGCGGAGGGGCTCCCGAGGGGGCTCCTGGGCCTGGTTTGAGAGAGGCCAAGAACTGGAATAAGAACATGGTCCCTAGAGGGAGGAATGAAAGAGGGGGCAGATGTGACTCAGTTCAGTCCTAGTCTGAGCCCCTTTATTAAGGATAGCTCATCTTTCTCAAATAAGCAGAGTGATGGCTGCTTACTCGCTGTGGTGGTTTTTCCTTCAGGCAACCTTCACTTCATCCCAGTTCTCACATCCAGAATAATTTCTAAGATATGCTGCTTTTGCCACATCTCACAGTCCTTTCCTGGCTCTCACTTCCTCTTAGGTTCAGGACCTTTCTTTCCCCTGTTCCCTTCACTTAGTTTTTCTTTGCTTTGTCACCTGCCATCCATTCTGTTGTAACTGCAGTGTTTTGTGACTAGACTAAATTTGGTCAAGGAAGCAACCATTTAATTCCTTGGTTGAACACAATGCCTGTATGAATGTATATATACTGTATTTTGACTACGCAGTCACACTTTGCTGTATCGTATAGGTAGGTTGGTCTTTTTCTTCCTTTGTTTTATAAGAGCTGTGTCTTAGATTGCCTGTGGTTAACTCTAGTGCCTGAAATAACTTGTGTGTCACCCACACAGATCAAGTGCCACAATGTGTAGAGTGCTGTGGGGGATTGTGGGACTGTGGAAAAGATTTCGAGGAAACAGATGACCCTTTCTTGTTCTTGGGGGCCTTACACACTGGTTGAGACAGCACCCATTCACAAGAGAAACGCTGATCAAGTGTCTAGAACAGTGCCTGGAAAGGGTCAGAAGTCTGCTAAATAACCCTAGCCCAGGACAAGTCCCCACAAGTCTTTATGCTTTGCTTTGCCCATCTGCAAAACAGGTATAGTCTTACTCTTCTGTAAGAGGACTGTCATGTGATGAAGATAAAGTGAAATACAAGCTTTCCTAAGAAAATCCTGTATCACAGGTCAAAACACGCATAAGGCATGCAAGTACTGAGACGAAGCAGAGTAGACACACCCAATACCTGAAAAATGTTCATTGGTTTTACTAGAGTATTGAGGAGGGTCCTGCTGACACCCCTTGGGCTGGAGAGGCCTCCTCTGAAAGGGAGCCCTGGGAAAGGGCTGCTCTCACTCTTCACTCCTTTCTCCTCCCTCAGCTCCACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCCCAGGAGACCAGGCAGCTGCGCTCTTGACAGCCAGGTACCAGGTGAGCTGAGGAACCCTCTGCTTTTCCTCAGGGACTATTGCTACTGATGGAGTGTGGCCTCTCTCTCATCCCATCTGTAGACCTTGCCTGGAATTTTTTTCAATAGCAGACTCCAGTTTGGGAATTGATCCTCTTCGGAGACCTGGACTTCACATAAACCAACTTCCCATCTCCCCAGTGCCATGAGCAAACTCTGTTTTCTCTTTGTCCATGGTTGTGTGATGGGTGCTTATTAGATGTTTAAGGGTTATGGGCTTTATTCCGTAGGTTCTAATCTGTTCTCCCTCCTCCTCAACGTAAGTACACAGTGGATACCCTCTCTATGATCTTCATTCTCTGGCCATGGTGCTACAGTGTTCTCATTCCTCAGAGCAGCCAGGATGTGTTATTTCAGGAGTTTGTGACATTCGAGGATGTGGCTGTGCACCTTACTCGAGAGGAATGGGGATACCTGGACCCTGTTCAGAGGGACCTCTACAGAGAAGTGATGTTAGAGAATTATGGGAACGTGGTCTCACTGGGTAAGGACTTCCTTATTATTCGGTTTATCTATTTGAATTTCTTTACTTTCTTGTTTCTTCCTAAGTATAAGGTCTCTGAGAAGGTCTGTAGAGTGTGGCTTAGATTCCAGGACTTAGAACCTCTGAATCCTTATCTTTCACATCGTCTTCTCCGGGAGGGGTAATTAACGTTTGTTTGGGGGTGCCAAGAAGAGACATTCTCCTCCTTATCCCCAGTTCATGTTTATGGCCATTGTGGGGCATCTTTTCCCTTTTAGCAAAGGGAAACTTTCTTGTGCTTTGCTTGATTTCTCACCGTTCTTTTCTTTTCCATTTTTGTAGGAGAGACCCCAGGGTGGCCTCCCAACCTCCAACCAGACACTTTCCTCTTTGTTATCTCAGTGTCCCTGTATTAGAGAATTGAAGAATTTCCCATTTTTCTAGGAAAAAGAAATGCCGTTTATTTAAAAAGACAGGCTAAATTCCTTCTTGTTGAGTAGTCCCTCACCCCTTAAGATCCCCAGATGTATCTCCAAGCAGGCAGAACTTGAGATGTCATTTGAAGGCATGACTCACTGTGAGTACATTTCAGTGAGTCACCCAGAATGGTAATCCCACGTAACCACACCCAGGGCAGCAGAAATCTCAGATGTTTACCCCATGCTGAGGTGGGGTCAATGCTTAACTCATGTCTCTCCCTTGTCATTTTGAAAGGTACAGTGGGAAGCTGGGATTAGCCAAGCTGTAGTGCTGCTGGGAAGCATCAGTGGGGTTTGTCGGCAGCTCCCTTGGTGTGAGCATTGTTCCTTTTTCTTTAGTTTATTTTTTATATTATATTATATTTTTTATTTTATTTTATTTTTAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTCAACTCACTACAACCTCTGCCTTCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGGGCCACCACGCCCGCCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGCTGGTCAGGCTGATCTCGAACTCTTGACCTCAAGTGATCCACCTTCCTTGGCCTCCCAAAGTGCTGGAATTACAGGCATGAGCCACCGCACCCAGCCTCCTTTTTCTTTAGTTTCTTGCTTGCTTCTGCACTCTTCTTTTTGTGTGTGTAAATACTGAATCATGCATTTTCTTTTCTTTTTTTTTTTTCCGTTGGCTTTGTCTATGCTGGTGGCATCCAGGGCATTGCTTTGTCTCCCTGATTATGCTCAGGATTCAAGGTCTTCTTATTTGTGGGGAGGCAGGCTGCCCACTGGGACGGTTTTTAGTGTGTTTTCCATTCCTGGCTCTTTAATCTTTGTAG
Seq C2 exon
GCATACTTCTCCGCCTTCCCACCACCCGGATTCATAGTGTGAATTCCTGCCCGGCCCTGAGTCATACCCAGGCAAGTGCTTTCTCTGGAGAAACACTTGCCGTCCTTACAGCAGGAATCTCCAAGAGATGGCCCAAGTATCGGCTTCCCATCGATATTGCTCGTCCCTGCTCGGAAACTCCTTTTCCACGATTGTGAGATATTAAAATTGACTGATGGAATAGAAGCTCCCCAGGATGCCACCACTGTGTAAAATCGCAGCTCCTCAAATTACCTCTGTTTAATTTCAAATGTTAGGGTCCAAGGAAGCCCTCTGTTGCAACCAGATATGTTTTGAACCCAGTTCATTCAGAAACCATGGTTGGTGGTCATCATCTACTTGTATTGTGAAAAACCAGAAATTCCAAATTCAGCTCTTCAGTTATGGTCTTTTCATATTATTTTAGAATGTGAAACTTATGCTGTGTGCCCCTCCTTTTATGTGGCGAACACAACCTGCCCCGTATGGTGCCTAACTCTCCTGTGAACCCTGGGCTTCCCTCATGTTTAACATTCTGGTTTCCTCCTTCCTTGAAGTCCCTGTGGCCCTCTTCAAGGTCCTACCTTCCTACCCTTTATTCTTTGTGGTTCTGTACAGATTGATGCAATTATATTGCCTTTCCTGATTAAGTGTTCCTTACTCTGTCCTTGATGGAGGGGAGAAGGGAGGGCAAAGAAGTTAAATTTATTTCAGGGCATCAAATTGAATATCTACTTAATAACTTTGTAAACTGTAAAGTGACATACATATAATTGTAAAGTACTGTTAATTTTATCTAATAATTACAGAGTTTCCAACAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343:ENST00000357864:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains