HsaEX6009264 @ hg38
Exon Skipping
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:HGNC:30899]
Coordinates
chr7:99561888-99564705:+
Coord C1 exon
chr7:99561888-99561973
Coord A exon
chr7:99562368-99562494
Coord C2 exon
chr7:99563863-99564705
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCCAGGATGTGTTATTTCAGGAG
3' ss Score
3.35
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTCCACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCCCAGGAGACCAGGCAGCTGCGCTCTTGACAGCCAGGTACCAG
Seq A exon
GAGTTTGTGACATTCGAGGATGTGGCTGTGCACCTTACTCGAGAGGAATGGGGATACCTGGACCCTGTTCAGAGGGACCTCTACAGAGAAGTGATGTTAGAGAATTATGGGAACGTGGTCTCACTGG
Seq C2 exon
GCATACTTCTCCGCCTTCCCACCACCCGGATTCATAGTGTGAATTCCTGCCCGGCCCTGAGTCATACCCAGGCAAGTGCTTTCTCTGGAGAAACACTTGCCGTCCTTACAGCAGGAATCTCCAAGAGATGGCCCAAGTATCGGCTTCCCATCGATATTGCTCGTCCCTGCTCGGAAACTCCTTTTCCACGATTGTGAGATATTAAAATTGACTGATGGAATAGAAGCTCCCCAGGATGCCACCACTGTGTAAAATCGCAGCTCCTCAAATTACCTCTGTTTAATTTCAAATGTTAGGGTCCAAGGAAGCCCTCTGTTGCAACCAGATATGTTTTGAACCCAGTTCATTCAGAAACCATGGTTGGTGGTCATCATCTACTTGTATTGTGAAAAACCAGAAATTCCAAATTCAGCTCTTCAGTTATGGTCTTTTCATATTATTTTAGAATGTGAAACTTATGCTGTGTGCCCCTCCTTTTATGTGGCGAACACAACCTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-'8-21,'8-15,11-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.031 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCAGGTGCCTGCTCTTC
R:
CGAGCAGGGACGAGCAATATC
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains