HsaINT0188020 @ hg19
Intron Retention
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:30899]
Coordinates
chr7:99158156-99159596:+
Coord C1 exon
chr7:99158156-99158318
Coord A exon
chr7:99158319-99159510
Coord C2 exon
chr7:99159511-99159596
Length
1192 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
ACTCCTTTCTCCTCCCTCAGCTC
3' ss Score
9.75
Exon sequences
Seq C1 exon
TGATGGTCATTGTCCTCCAGAGCAGTGATGGAGGAAATACCAGCCCAGGAAGCAGCAGGGTCACCAAGGGTCCAGTTTCAGTCTTTGGAGACCCAGTCTGAGTGTCTGTCCCCAGAGCCTCAGTTTGTGCAGGACACCGACATGGAACAGGGACTCACTGGGG
Seq A exon
GTAAGGCAGAGAAAGCACTTCCGTCTGGGAGAGTGGGAGTGCGGAGGGGCTCCCGAGGGGGCTCCTGGGCCTGGTTTGAGAGAGGCCAAGAACTGGAATAAGAACATGGTCCCTAGAGGGAGGAATGAAAGAGGGGGCAGATGTGACTCAGTTCAGTCCTAGTCTGAGCCCCTTTATTAAGGATAGCTCATCTTTCTCAAATAAGCAGAGTGATGGCTGCTTACTCGCTGTGGTGGTTTTTCCTTCAGGCAACCTTCACTTCATCCCAGTTCTCACATCCAGAATAATTTCTAAGATATGCTGCTTTTGCCACATCTCACAGTCCTTTCCTGGCTCTCACTTCCTCTTAGGTTCAGGACCTTTCTTTCCCCTGTTCCCTTCACTTAGTTTTTCTTTGCTTTGTCACCTGCCATCCATTCTGTTGTAACTGCAGTGTTTTGTGACTAGACTAAATTTGGTCAAGGAAGCAACCATTTAATTCCTTGGTTGAACACAATGCCTGTATGAATGTATATATACTGTATTTTGACTACGCAGTCACACTTTGCTGTATCGTATAGGTAGGTTGGTCTTTTTCTTCCTTTGTTTTATAAGAGCTGTGTCTTAGATTGCCTGTGGTTAACTCTAGTGCCTGAAATAACTTGTGTGTCACCCACACAGATCAAGTGCCACAATGTGTAGAGTGCTGTGGGGGATTGTGGGACTGTGGAAAAGATTTCGAGGAAACAGATGACCCTTTCTTGTTCTTGGGGGCCTTACACACTGGTTGAGACAGCACCCATTCACAAGAGAAACGCTGATCAAGTGTCTAGAACAGTGCCTGGAAAGGGTCAGAAGTCTGCTAAATAACCCTAGCCCAGGACAAGTCCCCACAAGTCTTTATGCTTTGCTTTGCCCATCTGCAAAACAGGTATAGTCTTACTCTTCTGTAAGAGGACTGTCATGTGATGAAGATAAAGTGAAATACAAGCTTTCCTAAGAAAATCCTGTATCACAGGTCAAAACACGCATAAGGCATGCAAGTACTGAGACGAAGCAGAGTAGACACACCCAATACCTGAAAAATGTTCATTGGTTTTACTAGAGTATTGAGGAGGGTCCTGCTGACACCCCTTGGGCTGGAGAGGCCTCCTCTGAAAGGGAGCCCTGGGAAAGGGCTGCTCTCACTCTTCACTCCTTTCTCCTCCCTCAG
Seq C2 exon
CTCCACCTGTTCCTCAGGTGCCTGCTCTTCCCCGTGAGGGAAGCCCAGGAGACCAGGCAGCTGCGCTCTTGACAGCCAGGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-ZNF655:NM_024061:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.924 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCATTGTCCTCCAGAGCA
R:
CTGGTACCTGGCTGTCAAGAG
Band lengths:
246-1438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)