RnoEX0101631 @ rn6
Exon Skipping
Gene
ENSRNOG00000060129 | Zfp655
Description
zinc finger protein 655 [Source:RGD Symbol;Acc:1309158]
Coordinates
chr12:11132129-11141280:-
Coord C1 exon
chr12:11141195-11141280
Coord A exon
chr12:11140724-11140850
Coord C2 exon
chr12:11132129-11132233
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCCAGAATTATGATTTCAGGAG
3' ss Score
0.58
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTCCACCTGTTCCCCAGGTGCCTGCCCTTCCCCATGAGGGAAGCCCAGGAGACCAGGCAGCTGCGCTCCTGACAGCCAGGTACCAG
Seq A exon
GAGTTTGTGACATTCGAGGATGTGGCTGTGCATCTTACTCGAGAGGAGTGGGGATGCCTGGACCCTGTTCAGAGGGAGCTCTACAGAGAAGTGATGTTAGAGAATTATGGAAACGTGGTTTCACTGG
Seq C2 exon
GATTTCCAATTTCCAAGCCTGATGGAATTTCTCAGCGGGAACAAGATCTACAAGTCTTTGATCTGGAAACTCAGAATAGAGAAGGCGTAAGAAATGACTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060129_MULTIEX1-3/5=2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=0.047 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000084637fB16993
Main Skipping Isoform:
ENSRNOT00000084637fB16992
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCCCAGGTGCCTG
R:
ACAGTCATTTCTTACGCCTTCTCT
Band lengths:
181-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]