GgaEX1004851 @ galGal4
Exon Skipping
Description
zinc finger protein CKR1 [Source:RefSeq peptide;Acc:NP_990640]
Coordinates
chr16:201543-203835:+
Coord C1 exon
chr16:201543-201629
Coord A exon
chr16:201847-201970
Coord C2 exon
chr16:202295-203835
Length
124 bp
Sequences
Splice sites
3' ss Seq
CCCCCACCCCCCCCCTTTAGGGG
3' ss Score
10.69
5' ss Seq
TCGGTAACG
5' ss Score
6.62
Exon sequences
Seq C1 exon
CGGCGCTGCGTTCGCCTCCATTCTGGGGTCTGAGGGGGATCCGCGCCCCATAGGATGCGTTTTCCCAACGTATGGATTTAATTCCAG
Seq A exon
GGGTCTCCCTGCCCTGTAGGGGATGCCCTGCCTGCCATGGAGCCCTATGTGCTGCTGGACCCGCGGCAGAAGGCGCTGTACCGGGATGTGATGCAGGAGAGCTACGAGACGCTGATGTCCATCG
Seq C2 exon
CTCAGGGCTTGGTGAACCACAAAGCAGCGGAGGAGGACGCCGTGGGGCTGAAGGAGGACGCCGTGGGGTCGGAGGAGCCCCAAACGCACCCGCCCCATAACCCGGCACAGAACCGAACTGCGGGATCCCACAGGCGGAAAGCGAAGCGCCCCGACAAAGCCGTCCCCCTCGGGGTCGCGCAGACCCCCCCCGCCGCCCCGACCCCCAAACGCGATGGGGTGAAGCCCTCCCGGGTTCGGGACCGCCCGTTCGGCTGCCCCGACTGCGGCAAATCCTTCCCGTGGGCGTCGCATTTGGAGCGGCACCGCCGGGTCCACACGGGGGAGCGGCCCTACAGCTGCCCCGAGTGCGGGGAATCCTACAGCCAAAGCTCCCACCTCGTCCAGCACCGCCGCACCCACGGCGGCGACCGACCCCACAAATGCCAGCACTGCGGCAAACGCTTCGCCGGCGCCGCCCAACTCCTCGCGCACAGCCGGGGCCACGCGGCCGACAGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027546_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.588 C2=0.455
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=85.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF127732=DZR=WD(100=11.3),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATAGGATGCGTTTTCCC
R:
CATCGCGTTTGGGGGTCG
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]