GgaALTA1002644-1/2 @ galGal4
Alternative 3'ss
Description
zinc finger protein CKR1 [Source:RefSeq peptide;Acc:NP_990640]
Coordinates
chr16:201543-201970:+
Coord C1 exon
chr16:201543-201629
Coord A exon
NA
Coord C2 exon
chr16:201866-201970
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
GGGGTCTCCCTGCCCTGTAGGGG
3' ss Score
7.1
Exon sequences
Seq C1 exon
CGGCGCTGCGTTCGCCTCCATTCTGGGGTCTGAGGGGGATCCGCGCCCCATAGGATGCGTTTTCCCAACGTATGGATTTAATTCCAG
Seq A exon
NA
Seq C2 exon
GGGATGCCCTGCCTGCCATGGAGCCCTATGTGCTGCTGGACCCGCGGCAGAAGGCGCTGTACCGGGATGTGATGCAGGAGAGCTACGAGACGCTGATGTCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027546-1-1,1-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.588
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=85.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATAGGATGCGTTTTCCCA
R:
CTGCATCACATCCCGGTACAG
Band lengths:
118-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]