BtaEX0041229 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008349 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:HGNC:13847]
Coordinates
chr23:29861448-29862733:+
Coord C1 exon
chr23:29861448-29861559
Coord A exon
chr23:29861878-29862004
Coord C2 exon
chr23:29862629-29862733
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAGGAACATGTTGTTTCAGGAG
3' ss Score
2.54
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GCTTATTTCCCTTCTCTCAGCTCTACCATTTCCTCAGTGCCCTGCCTTAGCCAGAGATGGAAGCCAAGGAAACCTGCCAGGAGCAAAACATACAGTGATGAGCCAGCCTCAA
Seq A exon
GAGTCAGTGACATTTGAGGATGTAGCTGTGAACTTCAGTCATGAGGAGTGGCAGTGTCTGACCCACGCTCAAAGACACCTCTATAAAGATGTGATGTTGGAAAATTATGGGAACATGGTGTCACTTG
Seq C2 exon
GATTTTCATTTTCTAAACCACCTTTGATCTCCCATCTGGAGCAAGGTACAGAGCCCTATGTTCAGGATCGACAGGACTGGGAGTTCCTGAGCTGCTCCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008349-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTCTCTCAGCTCTACCA
R:
CTGGATAGGAGCAGCTCAGGA
Band lengths:
210-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development