RnoEX0101632 @ rn6
Exon Skipping
Gene
ENSRNOG00000060129 | Zfp655
Description
zinc finger protein 655 [Source:RGD Symbol;Acc:1309158]
Coordinates
chr12:11132129-11140850:-
Coord C1 exon
chr12:11140724-11140850
Coord A exon
chr12:11139564-11139634
Coord C2 exon
chr12:11132129-11132233
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTTTGATCTTTATAGGCA
3' ss Score
8.38
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GAGTTTGTGACATTCGAGGATGTGGCTGTGCATCTTACTCGAGAGGAGTGGGGATGCCTGGACCCTGTTCAGAGGGAGCTCTACAGAGAAGTGATGTTAGAGAATTATGGAAACGTGGTTTCACTGG
Seq A exon
GCATACTTCTCCGCCTTCCCACCACCCGGATTCATTGTGTGAATTCCTGCCCAGCCCTGAGTCATACCCAG
Seq C2 exon
GATTTCCAATTTCCAAGCCTGATGGAATTTCTCAGCGGGAACAAGATCTACAAGTCTTTGATCTGGAAACTCAGAATAGAGAAGGCGTAAGAAATGACTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060129_MULTIEX1-4/5=3-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000084637fB16994
Main Skipping Isoform:
ENSRNOT00000084637fB16993
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCGAGGATGTGGCTGTG
R:
AGATCTTGTTCCCGCTGAGAA
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]