MmuEX1028599 @ mm10
Exon Skipping
Gene
ENSMUSG00000007812 | Zfp655
Description
zinc finger protein 655 [Source:MGI Symbol;Acc:MGI:1919861]
Coordinates
chr5:145235737-145243024:+
Coord C1 exon
chr5:145235737-145235863
Coord A exon
chr5:145237050-145237242
Coord C2 exon
chr5:145242920-145243024
Length
193 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTTGATCTTTATAGGCA
3' ss Score
7.85
5' ss Seq
ATTGTAAGA
5' ss Score
4.37
Exon sequences
Seq C1 exon
GAGTTTGTGACATTCGAGGATGTGGCTGTGCATCTTACACGAGAGGAGTGGGGATGCCTGGACCCTGTTCAGAGGGAGCTCTACAGAGAAGTGATGTTAGAGAATTATGGAAACGTGGTCTCACTGG
Seq A exon
GCATACTTCTCCGCCTTCCCACCACCCGGATTCATTGTGTGAATTCCTGCCCAGCCCTGAGTCATACCCAGGCAAGTGCTTTCTCTGGAGAAACACTTGCAGTCCTTACGGCAGGAATCACCAAGAGATGGCCCAGGGATCGGCTTTCCATCGGGAGTGCTCATCCCAGCACGGAAACTCCTTTTCCAAGATT
Seq C2 exon
GATTTCCAATTTCGAAGCCTGATGGAATCTCTGAGCGGGAGCAAGATCTACAAGTCTTTGATCTGGAGTCTAAGAATAGAGAAGTCATAAGAGGTGACTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007812_MULTIEX1-4/5=3-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.197 C2=0.306
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACATTCGAGGATGTGGC
R:
GTCACCTCTTATGACTTCTCTATTCT
Band lengths:
220-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types