RnoEX0101633 @ rn6
Exon Skipping
Gene
ENSRNOG00000060129 | Zfp655
Description
zinc finger protein 655 [Source:RGD Symbol;Acc:1309158]
Coordinates
chr12:11121007-11143065:-
Coord C1 exon
chr12:11142928-11143065
Coord A exon
chr12:11132129-11132233
Coord C2 exon
chr12:11121007-11122951
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATTTCCTTCTCTGTGAGCAGGAT
3' ss Score
8.21
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGATGGAGGAAATAACATCCCAAGAAGCAGCAGAATCACCAAGGGTCCAGTTTCAGTCTTTGGAGAGCCAGTCTGAATGTCTTTCCCCAGAGCTTCGGTTTCTGCGGGACACAGAGATGGAGCAGGGATACACTGATG
Seq A exon
GATTTCCAATTTCCAAGCCTGATGGAATTTCTCAGCGGGAACAAGATCTACAAGTCTTTGATCTGGAAACTCAGAATAGAGAAGGCGTAAGAAATGACTGTTCAG
Seq C2 exon
GCGATCTCTGCTCTGGATCAGTATGTTCTACGACAGATTCTGAAGGACCACCTGAGTGATGTCACCGGAGTCCGTTTCAAGAGTGGGAGCCTTGCCAGACTAAAGGCAGTCAGTGCTCTTAACTGCTGAGCCATCTTTCCAGCCTGATTAAAATTGTTTCTAAGGCTTCCCCATTTTAATGTACTTATTGTAAATATTTTAATCATTAAAGGAGGATGTAGGACTGGGAGAGCTCAGTCAACAGTGCTGGGTCGCTGTGGAGAAGATGCTGAATTCCATCCCAGCATAGCATAAACTGTGTGGTACTTCAGGCCTGTAATCCCAGCACTAGGAAGGTGGAGGCAGGAGGATCAGAAGCCAGCCTGGACTACATAAGACCTTATCTTAAAACTAAAAGAAGTGGGCTGGAGAGATGGCTCAGTGGTTAACAGCACCCGACTGCTCTTCCAGAGTTCATGAGTTCAATTCCCAGCAACCGCATGGTGGCTCACAACCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060129_MULTIEX1-5/5=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.430 A=0.208 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAATCACCAAGGGTCCAG
R:
CAGGCTGGAAAGATGGCTCAG
Band lengths:
255-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]