RnoEX0101630 @ rn6
Exon Skipping
Gene
ENSRNOG00000060129 | Zfp655
Description
zinc finger protein 655 [Source:RGD Symbol;Acc:1309158]
Coordinates
chr12:11132129-11143065:-
Coord C1 exon
chr12:11142928-11143065
Coord A exon
chr12:11141195-11141280
Coord C2 exon
chr12:11132129-11132233
Length
86 bp
Sequences
Splice sites
3' ss Seq
GCTCCTTTCTCCTCCCTCAGCTC
3' ss Score
8.92
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGATGGAGGAAATAACATCCCAAGAAGCAGCAGAATCACCAAGGGTCCAGTTTCAGTCTTTGGAGAGCCAGTCTGAATGTCTTTCCCCAGAGCTTCGGTTTCTGCGGGACACAGAGATGGAGCAGGGATACACTGATG
Seq A exon
CTCCACCTGTTCCCCAGGTGCCTGCCCTTCCCCATGAGGGAAGCCCAGGAGACCAGGCAGCTGCGCTCCTGACAGCCAGGTACCAG
Seq C2 exon
GATTTCCAATTTCCAAGCCTGATGGAATTTCTCAGCGGGAACAAGATCTACAAGTCTTTGATCTGGAAACTCAGAATAGAGAAGGCGTAAGAAATGACTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060129_MULTIEX1-2/5=1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.430 A=0.724 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000084637fB16992
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCCAAGAAGCAGCAGAA
R:
TGTTCCCGCTGAGAAATTCCA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]