BtaEX6098745 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008349 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:HGNC:13847]
Coordinates
chr23:29861878-29866909:+
Coord C1 exon
chr23:29861878-29862004
Coord A exon
chr23:29862629-29862733
Coord C2 exon
chr23:29865379-29866909
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTCTGTACAACCAGGAT
3' ss Score
7.91
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGTCAGTGACATTTGAGGATGTAGCTGTGAACTTCAGTCATGAGGAGTGGCAGTGTCTGACCCACGCTCAAAGACACCTCTATAAAGATGTGATGTTGGAAAATTATGGGAACATGGTGTCACTTG
Seq A exon
GATTTTCATTTTCTAAACCACCTTTGATCTCCCATCTGGAGCAAGGTACAGAGCCCTATGTTCAGGATCGACAGGACTGGGAGTTCCTGAGCTGCTCCTATCCAG
Seq C2 exon
TATCAGCTGCCAAGACATGGCCTGAGAGTGAGAAGGCAAGATCAGAACAGGAGGTTTTTGAAAATGGAGAAGTATGCTGGGTGAAATTTAAAAGTCTCCTAAAAGTTGTTTCCCAGGATCCAGAGGTTGGAGAAGTTTGTGTACAAGATGTCAAATTAGAGAATCAATGGGAAATGCCTGTGAGAGAGAAATGGAGAGAAGAGAAAGAAAGCTGTGATAAAGTGACTTTCAGGAAAGGAAAGAACCAGAAGGGACTTATAAAACACTTCAGTCCAAACTCAGAATGTATTCTGTATGGAGTTCTTACGGAAAAGAAACAGCATGAATGTACCCGATGTGGCAAAAACTTCAGTTGGCATTCTGACTTAATTCTCCATGAGCGAATTCACTCTGGCGAGAAACCCTATGTGTGTAATGAGTGTGGGAAAGCATTCAAGACCAAAAATCAACTTTCCATGCACCAGATAATCCACACAGGGGAGAAACCCTTTAACTGTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008349-'6-10,'6-7,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.074
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.7),PF0013017=C1_1=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCACGCTCAAAGACAC
R:
CTCTCTCACAGGCATTTCCCA
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]