HsaEX6046079 @ hg38
Exon Skipping
Gene
ENSG00000197935 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:HGNC:13847]
Coordinates
chr6:28994785-28999613:-
Coord C1 exon
chr6:28999487-28999613
Coord A exon
chr6:28998734-28998838
Coord C2 exon
chr6:28994785-28996586
Length
105 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTCTCTGCAACCAGGAT
3' ss Score
8.03
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGTCAGTGACATTTGAGGATGTAGCTGTGAACTTCACTAACAGGGAGTGGCAGTGTCTGACCTACGCTCAAAGGCATCTCTATAAGGATGTGATGTTGGAAAATTATGGGAACATGGTATCACTTG
Seq A exon
GATTTCCATTTCCTAAACCTCCTTTAATCTCTCATCTGGAGCGAGAAGTAGACCCCTGTGTGCAGGATCCACAGGACAGGGAGTCCCTAAGCTGCTCCTACCCAG
Seq C2 exon
TGTCAGCTGACAAGATGTGGCCTGAGAATGAAAAGGCAAGTTCACAACAAGAGATTTTTGAAAATGGAGAAGCCTACTGGATGAAATTTAACAGTCTCCTAAAAGTTGATTCCCGGGATCCTAAGGTTAGAGAAGTTTGTGTTCAGGATGTCAAATTAGAGAATCAATGGGAAACATCTATAAGGGAGAAACTGAGAGAAGAGAAAGAAGGCTCTGAGGAAGTGACCTGCAAAAAAGGAAAGAACCAGAAAGTGCTTAGTAAAAACTTGAATCCAAACTCAAAACATAGTCAATGTAATAAAGTTCTTATAGCACAGAAACTCCATGAATGTGCCAGGTGTGGCAAAAACTTCAGTTGGCACTCAGATCTAATTCTCCATGAGCAAATTCATTCTGGTGAGAAACCCCATGTGTGTAATGAGTGTGGGAAAGCATTCAAGACCAGAAATCAGCTTTCTATGCACCGGATAATCCACACAGGGGAGAAACCTTTTAATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197935-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.222 C2=0.129
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAACAGGGAGTGGCAGTGT
R:
TGACATCCTGAACACAAACTTCTCT
Band lengths:
244-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains