BtaEX0040998 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003575 | ZKSCAN4
Description
zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:HGNC:13854]
Coordinates
chr23:30188572-30190571:-
Coord C1 exon
chr23:30190489-30190571
Coord A exon
chr23:30190164-30190286
Coord C2 exon
chr23:30188572-30188695
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGTTTCACTCCTAGCTG
3' ss Score
9.72
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
TTCTCCAGGTTCCAAGGCTTGCCCCTGGGGGGCGCTGCAGAGAAGATGCCGTGATAGCCACCAGGTTCGCCCCAGGGTCCCAG
Seq A exon
CTGAGGGAATGTCTGTGCTTCTCGGTTCTTCCTACCCCATCTGTTTGGTCAACTCTTTCATCAACAAGATTTTCTTCTTCAAGGGAAATTTAGCAAATACAAACTGAAGATTTTGTTGTGATG
Seq C2 exon
GGGCCATTTAAAATGGAAGATGTGGCACTGACTGTTTCCCCTGGATGGACACAGCTGGATTCATCTCAGGTGAACTTGTATGGAGATAAAAGGCAAGAGAACCATGGCAGCCTGACCTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003575_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.690
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.2)
Main Inclusion Isoform:
ENSBTAT00000004651fB7936
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCAGGTTCCAAGGCTTG
R:
AAGGAGGTCAGGCTGCCAT
Band lengths:
205-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development