BtaINT0164637 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003575 | ZKSCAN4
Description
zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:HGNC:13854]
Coordinates
chr23:30188572-30190571:-
Coord C1 exon
chr23:30190489-30190571
Coord A exon
chr23:30188696-30190488
Coord C2 exon
chr23:30188572-30188695
Length
1793 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AACTAACTCTATTGTTTTAGGGG
3' ss Score
7.06
Exon sequences
Seq C1 exon
TTCTCCAGGTTCCAAGGCTTGCCCCTGGGGGGCGCTGCAGAGAAGATGCCGTGATAGCCACCAGGTTCGCCCCAGGGTCCCAG
Seq A exon
GTGAGCTGGAGCCCCTCTCCCTCCCCCTGCACCCAGCACCCTTCACTACTGATGGGCTCCCCAGTAGATCTCTTTCTCCCCATTCCTCCTCCACCCTCATCCTATATGCATCTGGAGTTTTGAGTTTTCTCATCTATTCCAAGATTGCCATATGTCATTATTTTGGTGTTCACTTAAGAGGATTTTTCTGTTTCACTCCTAGCTGAGGGAATGTCTGTGCTTCTCGGTTCTTCCTACCCCATCTGTTTGGTCAACTCTTTCATCAACAAGATTTTCTTCTTCAAGGGAAATTTAGCAAATACAAACTGAAGATTTTGTTGTGATGGTAATTTTTTTTTTTTTTTTAAGTATCAAAAACTGTGCTGCTAGTGAGTAATATAAAGTCATGCTCTGTCCCCTAGAGACTTAAAGGAACACAGAATGTGTGTGCTTTTAGTCCAAGATACTGAACAGCATTTGCTTAACCTGGATTTTAATTTCTTACCTGGTCTTTCATGTCCTGCTTGAAGACCTCAGTATTTGAGGCTCTGTAGAATCTATTTTCCCTCACCTCAGACCTAGATTTCATTTTCCCTCACCTCAGACCTAGATTTCATTGTATTTTAAAATCATTGCTATAAATAAGCCCCCACCCCTGGTTTGCCAAAGCACATCACATATATTTTGAAAAGTTTGGATATGGTTCCACTCCTTCCACTGCATTTGTCCTTATTTTCCAAACCTTTTACTTTCTGGACTTTTTAGATATTTATGTGAAAGTACTTATTGTAATGTGTGTATTTCTTTCCTTTAATGGTTATTTTTTTTGATGAAGATATTATTAGAGACAGGGTTAAGTAGGCATAAATGTACCATACTTGTTTTTTTATAAATAGCCCATGTAAAGGGAATGTTCCTTCATTACATGTACCCAGTTTTTTTTTTTTTTTTTTTTTATTGGAGCATAGTTGATTTATAATATGTTAGTTTCAGGTATATAGCAAAGTGAATCAGTTATACATATACATATATCCACTCTTTTTAAAAAATTAATTTATATTTTGGCTGCACCACACAGCATATGGGACCTTAGTTCCCTGATCAGGGATCAAACCTGCACTCCCCTGCAGTGGAAGTGTAGAGTCTCAACCACTGGACCATCAAGGAAATCCCTCTCCACTCTTTTTAGATTCTTTTCCCATATAAGCTGTTACAGAGTATTGACTAGAATTCCCTATGCTATAAAGTAGGTCCTTACTAGTTATCTATTTTATATGTAGTAGTATGTATATGTTGGAGAAGGCAATGGCAACCCACTCCAGTGTTCTTGCCTGGCAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTGCATGGGGTCGCTAGGAGTCAGACACGACTGAGCGACTTCACTTTGACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCCTGTCTGGAGAATCCCAGGGATGGGGGAGCCTGATGGGCTGCCGTCTATGGGGTCTCACAGAGTTGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGTATGTATATGTCAATCCCAATCTTCGAATTTATCCTTTCCTACCTCTTATCCCCTAGTAATTGTCAGTTTGTTTTCTACACCTGTAATTCTATTTCTGATAAGTTCATTTGTACCCTTTTTTTATATTCCACATATAAGCAACATTATATGATGTTTGTCTTTCTCTGTCTGACTGACTTGTACTCAGTATGAGTGCCTGGGGAGTGATTTTGGGCAAATGGAACTAACTCTATTGTTTTAG
Seq C2 exon
GGGCCATTTAAAATGGAAGATGTGGCACTGACTGTTTCCCCTGGATGGACACAGCTGGATTCATCTCAGGTGAACTTGTATGGAGATAAAAGGCAAGAGAACCATGGCAGCCTGACCTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003575:ENSBTAT00000004651:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.690
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCAGGTTCCAAGGCTTG
R:
CAAGGAGGTCAGGCTGCCAT
Band lengths:
206-1999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]