HsaINT0185873 @ hg19
Intron Retention
Gene
ENSG00000187626 | ZKSCAN4
Description
zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:13854]
Coordinates
chr6:28214747-28215927:-
Coord C1 exon
chr6:28215845-28215927
Coord A exon
chr6:28214871-28215844
Coord C2 exon
chr6:28214747-28214870
Length
974 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGGACTACCTATTGTTTTAGGGT
3' ss Score
6.99
Exon sequences
Seq C1 exon
TTCTCCAGGTTCCTGGGCTTGCCCAGGGAGGGTGCTGCAGAGAAGATGCAATGGTAGCTTCCAGGCTCACTCCAGGGTCCCAG
Seq A exon
GTGAGCTGGAGCTCCTCTCCCTCCCCAGCGCCCCATACCTTTCACTACTGTTGGGCTCCGCATTAAGTTCCTCCCTCCCCAGTCCTACCCCACCCCTATCCTAGATCTACATGAATTTGAGTTTTCTCATCTATCCCAAAGTTGCATATAATTGTCCACCTTCATTTTGGTGCCCACCTAAGAGGACTTTCCTGTTTCACAACAACCTTGGAGTTTTCTTTGTACTTCTCAGATCTTTCCTCCTACATTTCTTCGGTCAGCCTCTTCTTCAATGTGATTTTTCTCCTTCAACAAGGGCAGTTCCGCAAAAGCAAACTGAAGGTTTTGTTGGGATGGTCATTCTGTTTTGCTTTTTAAGATACAATAAGCTGTGCTGTTGGTGAGGGATATAAAGGCCTGGCCCTTGCCCTCAAAGAACTTATACTTGAAAGGTCAGATAAGGCATAGTTATCTTGAAGTTATTTATATTACAATATGAACAATCTTTTCTCAACCTAGATTTCAATTTACTACTCAGCCTTTCCTGTCCTGCTTGAAGATCTCAGTGTTTGAGGCTGTGTAGTATCCTTTTTTTCCCCTAATTTTTCTCACTTCAGTTCTAGATTTCATTGTATTTTTGAAGCTATTAATGTAAATGAACCCCTACTCTCACTTTGCCAAAGCATACTGCAAATCTTTTGAAAATTTTGGACATAGTTCCATTCCTTTTGCTGCATTGACCCTTGTCTTCCAAACCTTTTTACTTTCTGGACTGTTTAGATATTTATATGAAAGTACTTATCCTAAAATGTGTGTAATATTTCTTTCATTTGGCAGGTTTTCTTGATTAAGATGTTATTAGAGATAAAGCTAAATTGGTGTAGGTGTGCCACACTTGCTCCTTTTTAAAGAGCCTCTTTAAAGGGGATGTTCATTCTTTGCTTTGGGGGTAATTTTGGGCAAGAGGAGCTAGTTAGGACTACCTATTGTTTTAG
Seq C2 exon
GGTTTGCTGAAAATGGAAGATGTGGCCCTGACCCTCACTCCTGGGTGGACACAGCTGGATTCATCTCAGGTGAACCTCTACAGAGATGAAAAGCAGGAGAACCATAGCAGCCTGGTCTCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187626-ZKSCAN4:NM_019110:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTCCTGGGCTTGCC
R:
GGAGACCAGGCTGCTATGGTT
Band lengths:
198-1172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)