BtaEX0041028 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36402051-36404701:-
Coord C1 exon
chr12:36404667-36404701
Coord A exon
chr12:36404276-36404495
Coord C2 exon
chr12:36402051-36402180
Length
220 bp
Sequences
Splice sites
3' ss Seq
ATTACCCAAAATAAAAACAGGTC
3' ss Score
3.37
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
ATCAGGGTTGTCAGACGTCCCGAACCAAAATGACA
Seq A exon
GTCTTTTTCTGCCTGCTGAGGGACACAAAGGTGGATTAGTTGTGGCCCTCACCCACGTCGGGCGAGATGACACATGAATACTCGTGTCCCTGGGCAAGAGTAGTGGAGCGTTTGCAGTGGGCGAGCGTGTGTGGTCCAGCGGCTGTGACAGAGCTTCTGAACAGCCAAGCAGAAGGTTGCCAGTGGACGACGATGAGCCGGAGGAATGTGGTGTGCAGAG
Seq C2 exon
GGTTCAGCACCACCCCCTTCTCCAACCCCCAACAAGGAGATGAAGAACAAGGCAGTTCTGTGCAAACCTTTGACTATGACCAAGGCGACCTACTGCAAACCCCACATGCAGAGCAAGTCCTGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.000 C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000027190fB7945
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGGTTGTCAGACGTCCC
R:
TGTCTGACAGGACTTGCTCTG
Band lengths:
164-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development