BtaINT0164724 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36402051-36404701:-
Coord C1 exon
chr12:36404667-36404701
Coord A exon
chr12:36402181-36404666
Coord C2 exon
chr12:36402051-36402180
Length
2486 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CTCTCTTTGTTTCTCTGTAGGGT
3' ss Score
12.42
Exon sequences
Seq C1 exon
ATCAGGGTTGTCAGACGTCCCGAACCAAAATGACA
Seq A exon
GTAAGTATTGCTTAAGTAAAGTGCTAAATACTGACTTTTATAGTGTGGGCATAAAAAGTAATTAGTCCATTTTAATCTGATTATAATAATAAAAGATTTTTTTTTTTTTTACTTACCTGTTGAGATGGTTGAAGTATTCATATTCTGTTGAATTACCCAAAATAAAAACAGGTCTTTTTCTGCCTGCTGAGGGACACAAAGGTGGATTAGTTGTGGCCCTCACCCACGTCGGGCGAGATGACACATGAATACTCGTGTCCCTGGGCAAGAGTAGTGGAGCGTTTGCAGTGGGCGAGCGTGTGTGGTCCAGCGGCTGTGACAGAGCTTCTGAACAGCCAAGCAGAAGGTTGCCAGTGGACGACGATGAGCCGGAGGAATGTGGTGTGCAGAGGTGTGCACGTTTGTCCAGACTGCTCCCTGAGGCCAAGCTCGGAGGGGCCTGAGGTGGAGTTCTGGGGAGCCGGGGCAGGGTGGGCCGGCCGGCGCCCCTCAGACAGGATGGGGTCTGTGCTGGGGGCCAGGACAGCATAGTCAGTGGAATCGTCCCATGCTCACCAGGCACTTGGTCCACGCTGAGGAGTGTAAAGATGGTTGCTTCCTGTTGGTCCTCTTTGTGCAGCCATAAGGCAACTCCCAAGCTTGTTTCCAAGCTTTTGACCAAGGTTTCAAGACACCCCTTCACCTGCACCGAGGCGAATGAATACTTGTCTCTTCCAACAGCCCCGAGACCTTCTCACGGGAAGATGGGAGGACAGAGGGGGTGTGACCTGGGGGGAGCTGAGCCTTGCAGCGTCACGCTCTGCAGTCCGGAGTCCTCCCCACCTAGTCCTGTGAACTCTGGGAGCCTTAGTTCCCTGCTGAGGAGTGTCAGAGGATGAGAGTCAGCTGTGTAGTTGGGGGCAAGTCACTTCATGGTTCTCTGTGTGACTTTACCCTCGTTTGTAAGTGGGGCTTTGCTCCTTGTGGTGGAACCTCCTCAGGATCATTACAAAGAGCGCTGAGACAGAGGCCTGCATCAAGGAACTGCTGGGGCCCTGACTTCAGAACTCTTCACTCTGTCACCTCTCCCGGCCATGCATCGTCTGAGCCTCAGTTCCCTCGTCTGTAAAACAGGAGGAGAAAACACCTGCTGCCCATGTGGTGCTGAGAGGGTTAGAGGGCTCATGTCATAAGGTGCTGCAAGGGTGCTGTGCATGGAGTCCTGCCCATGGTAGCTGTTATATATAACAGGAGCTGTAGCCAGAAGCTGTGCCTGCCAACAACAGCACGTGTTTCTCAGAGTTCTGGGGCTTCCAGCAGACCCAGGGCCTAGTGAGGGTCTCTTCCTGCTTCCTCTTCCTGTCTTGCCATGTGTCCTTATGGGAGGGGAGGGGCTGTGGGGGCCCTTCTGTGAGGGCCCCAAGCCCATTCATGACCTTATCGCCTTCCAAAGGCCATGCCTTCAGGTGCCATCCAGTTGGGGTTCCATCTCAGTGTGAAGTTTAGGGGACACAGACACCCAGCCCTGCAGCAGACACTCAGGAGGTGTGGTGGCTGTTGTCATTGTAGTCTTCATTATTGGGGGTCCTTCAGCATTCGTTTTCAATAGGTATAGACCTTGCCTGTTGACTAACAGGAAAGGAAGGAACTTTTACCAGGTGACCAAGTTTAGTTGACATGGTGCCCTGTTTGTAGAGTGACAGGAGTGGAGCACGGGCGACCAGGACGTCTTGACTTGGACCTCTGGTTCATAAGGGGCTTCGAGAGCATTTCTCTGTTAAGACCCAACTTGCCTGGGTTTGGTGCCCACATTTTTTCTATCGCTCTCCCCATAGCACCTTTGTTTCTGCCTTTAGGGACAGGGCTTCAGCTTCCTTTATAGAGTGTATGCGTGTGTGTGCATGTGTGTGTGATGTGAACAGGCTGAAGCATCTGATAGACTATTGATACGTTTCTAAAATTACCCTGAAACACACAGCTTAAGGTTTAATAGCATTTATGGCAATTCTTTTCATCATTTTTCTTTTCAGAGTTAGTACCACATTAACAGTTTATGTAGTAGAAAAACCCAGAGTATCAGAAAGCCATAATAATTTCAATAATTTTTTTCTTTCTCAAAAAGAGCCTAATTATTTTAAAATACTGGGTTAACAACCTTGCTTTTTCACTTAGGAGTGAGACTTGTCTCTTATATTTTTAAAAATTTTGCTGTGGGGACTTACTGGCAGTCCACTGGTTAAGACCCCACACTTCCCAGTGGGGTGGGTGCAGGTTCACACCCTGGTGGAGAGCTAAGACCCCACATGCTGCAGGACCAGACAGTGTGCTGTGGTGTCTTGACGAGCAGATCTGTAGAGGGGTAATTACTGCGCTTTGCCGATAGTTGGGGTAGGTTCACATTGGTTCCATGTGTGTTCCCTCCACTGGAACACACTGGATATTTTTTAATAGCAAAAGCAGTAAAAATTCGAGGCAGAAATAAAATGTCTCTCTTTGTTTCTCTGTAG
Seq C2 exon
GGTTCAGCACCACCCCCTTCTCCAACCCCCAACAAGGAGATGAAGAACAAGGCAGTTCTGTGCAAACCTTTGACTATGACCAAGGCGACCTACTGCAAACCCCACATGCAGAGCAAGTCCTGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development