HsaINT0185979 @ hg19
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20626417-20632844:+
Coord C1 exon
chr13:20626417-20626451
Coord A exon
chr13:20626452-20632714
Coord C2 exon
chr13:20632715-20632844
Length
6263 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTCTCTTTGCTTCTCCATAGGGT
3' ss Score
12.15
Exon sequences
Seq C1 exon
ATCAGGGTTGTCAGACATCTCGAACCAAAATGACA
Seq A exon
GTAAGTATTGGTGAAATGGAGTGCTGAATTGTGATTTTTGTAATATGGGGTAAAAAATAATTAGGCCAATTTAATGTGATCATAATAGTAATTTTTTTGGTTTTTTTTTTGCTTTACTGAGACGGTGGAGTATTCAGCTGAATTATATTAATACCAGAGACTGTCATGCATGCTAAAGAATATAAAGGAGAATTAATTATAGCCTCTACTCACAATGGGGCGATAGACATAAGTGATATTTGAGTTGACGGATGTTTCCATAATAGATGCATCTTTAAGACAATGGCAATAGTATGTTTGAAATTAAGACAATGGCAATAGTATGTTTGAAATTAAGACAATGGCAATAGTATGTTTGAAATGACTGTATTTGTTCTGAAAGATACGAATAAGCTGACTGTAAACAGTTGAGTAGAAGATTGCCAGATAGGCATGAAAAGTAGGAGAATAATAAAGTACTAAGCACGTGTATTTGGCAGAACTACTTACTAGAGCCAAGCCTGAAGGGGATCTTTGGTGGAATAATGGAAAATGAGGCTGAAGGAATAGGCTGAGGCAGATTATTAATGGCTTTATGCATTTATTTTTCAAGTAGAGATCTGAAGATATATGTTGGTGGCTAGAATTTTTTGAGTTTAACAATTTGGGAAATACACAGTGTGTCCTGGATTTTTTTTCCTCCAATTTATTTTTCTTTTGGTGTAATACATCAAATTCTACACTTTTGTTAGCATTTTAAGAGTTTTATAGGTTGAAAGTGGCCATTGATGTTACTAATGACTACTAAAGATAAGAGGCAGTGCTTTTGCCACTGCCTGGCCTTGGCATGCTGCATCTTACAGCAGTCACCAGTGGTGGATCCTGCTATTTCTGGCATCCTTATCCGAGGGAAGCTCTTTGGGAGTCATTTATTGGCAATAAAGTCTCTGGGCTAGTTCTTGTTGTGTTACAAAAGAACAGATTAGTGGTTCCTAGCTCTGACTACTCATTAGAATCACCTGGCAACTTTTCAAAACCTTCCAGTGCCTGGGTTTCAACCCAAAAATTCTGTATTTTTAAAAAGTTCTGGCTGGGCACGATGGCTCACGCCTGTAATCCCTGCAACAAGGCAAGTGGATCACCTGAGGTCAGAAGTTCGAGACCAGCCTGGCCAACATGGTGAATCTCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGTAATAAGAGTGAAACTCCATCTCCATTAACAACAACAAAAAAAAGTTATTTAGGATGCTGATATGTAACCAGACATGAGAATCACTGATATAGATGAAAATTGGTATTTTTACATTTATTCTATTCAGTGTTTGTTTTTGATGTTAATAGTTGGACAGAATCCTAGAAAAGTAAGAATACTTTTTCCATACCCCCCCTTATGGAAATAACATTTTAAAATCAGATAATTTGGAAGTACGTAAAGTATTCACTTGAATTATCTGATTTTAATACCAGACACTTTTATCCATGCTGAGGGTATGAAAGATGACTACTCCCTATTTTATATTTATAAGGCAACTATTAGCACGATATTAAATATTTTTCTCCTCCTACAGCACTTGAACCAAACTATATGACAGAGGGATAGAGGGAGCATTATTAATAGGGAAGGATAAGTAAGGCTGCCATTGCAGCTGTTGCCTTTTGTCATATAAAGTCCTCTCCCATCTTTTCTTTGTAAGCTTTTGGAATCTTCTAATTCTCCACCCATAAACTTCAAAGGATAGGAGCTTAGCTGTATAATTTTGGGCAAGTTACTTCACTGTTCTTTTTGTGAGTTTCTTTATTTGTAAAATCAAGATGAATATAGTACCTACCTCATGTTGAATACTAAACGTGGTGTAACTGTTTTGTTCCAGACTTCATAGAGGCAGTATGTATAGTAAAGAACATAAACTTTGACATCAGATGAGTCTTACTTGAATCCTGATTTCAGAACTTTTAGCTCAGTGCCTGTTGCCAGGTTATATCACTTCTGAGCCTCAGTTTCCTCCTATGTAAAATGGGAGTGATAAAAAGTCCTACCTTTTGTGGTGGTAGGAGTATGCAATAAGATTTGGTGCTTTTCATAGTCCCTGGCATCTAGCAAATACTCAACAGATGGTGGCTTTTGTCATTATAATTTTTATTCTTTTGGGTCCTACTTCAGCATACACAGATAACTGTGTATCCTGCCTATTGACTAAAAAAGTAAAAAACATTCTAAAAAACAAGTTTGGTTCAAGTGTAGATTTTCACCAAGTGGCATAGTTAATTGACATAAAGTAGTATTTGCAGAATGGCAAGAAGTGCAACATTGAGCAATCCCAGGACATCTATGACTTTAGATCCTCTCTTCTGGGATTCCAGTTAAGAGCGAACTTTCCTAATGCCTGGTATGTAACAGATACTGTTTGCTAAGTTATTCTTTCCATTATGCAATGGTGGAAATTGAGGCATAAGAGATTGAGTGACTTGCCTGACGTCACACAGCAGTGGCTTTAAGTATAGTTGACCCTTGAACAACATGGATTTGAACTGCATTTGTCTACTTCCACATGGGGTTGTTTTTTTTTTTTTTTTCCCCCAACCAAACTTGGATGGAAAATAAAGGATTTGCAGGATGCGAGTTTGAGAGCATACTTTTCATATGGGTGAGTTCTATAAAGGCTGACTGTGGGAGTTGTGTATGCAGATTCTGGTATGAGGAGTAGGGGTAGGGGCATTGGTGGATGGTGGTGGTCCTAGAACCAGTCCTCCACATATACTGAGAGATAATTGTGCAGTCAGTCCTCATTCATGGATTTCAAATTTGCCTACCCACCAAAATTTATTTGTAACCCCTTAATCGATACTTAAGTGCTTTCACAGGCATTTGTAGATGTGCAGAGTGGTGAAAAATTTGAGTTATCCAATGTGCATGTTCCCAGTTGAAGTAGAACAAAGCAATGCTGTGCCTTTTTGTTTCAGCTCTCATACTGTAAACAAGTGTCCTTTTCTTAGTCTAATTAGTGTCAGGGTGTTTTGTTTTTGTTGTTTGCATTTTTGTGTTTTCTGTTGATGATTTTTGTTGTTTAGAAGGGCCAGCAAGTGTGGTGTTGAAGTGCTGTCTAGTGTCACTAAGAGCAAGAAAGCTGTGATGTACCTTATGGAGAAAATACTGTTAGAAAAGTTTCATTTAGGCATGAAGTTATAATGTTCTTGGTGTAAGTTCAGTATTAATGAATCAACATTATCGTACATCTAGAAAAAGGAAGAGGAAATTTGCCAGTCTACCCGAGTGCTATAGTAACATCTCTAGTTTGTGGTACAGCTAAGGAAAAGATACAATAATGACTAAACTTACGGATTCATGAGATTATGACCAATTTTTTTTTTTTAAAGCATACTGAACAGCTTTCAGCTCACAACAGGTTAATCGGGGTTAGGAAAATGTTAAAACGTTCTTGGCTATGTGAGAGCTAGCTGGCTTACACATTTTAAGGCAATGTGGTATGAAAAGTGTTGAAGTTGAGGCGAGTTTTGCAGATCAAGATACTATGGAAGAATACCTACGAAGTGTTATACAGGGAAAAGGTTATATGGAAGAGCTACTTTTCAACACTAATGGGACTGGCTTATTTTTACGAGGTCATTGGCATATGAACCTTTGAAATGCCCTTGGCCTTAATTCATCCAAAGAGTGTGCAAGCTTGTTATTGTATACCAATGCCAAGGGCACCTTTAAATGCAAACTCTTGATACACAGAGCTCAAAATTCTTGAGCACTTGCAGGGGAAAACCAGAAGTGTGTATCATTTCCATTGGAGGTGGGACAAAAAAGCATGGATGATACCCAAAATATTCTGGGATTGGTTTCATTGCTTCATCCTAGAAGTTGAACACTATCTTCAGGGTGAAAACTTAGCCTTCAAAGTTTTATTACTGGATAATGCCCCAGTTCATTGCTGTGAAGAACTTGGAAGTGCCCATCCCAATGTAGGAGTTCTTTTCATGCCCCCAAATACTAGTCTCTTCTCCAGCCCCTCAGACAGGGCATTTTAAAGGCTTTCACGGTGTACCACATGAGGGAGCTTTGTAACAAGGCTTGTGAGGCTCTCAATGCCGACAAGGAAACCACCATGGATAGACTCCTGGAAGCAGTCACAATATGCATCTTCTTGATTATGGCGACACAACCTGGGGGCAGTATAAAGCAGTCCATTGATAACTGTTGGGAAGATGTTTGATCAGACTGAAAAGGTGTTAAAGAAATTATAAAGAACAATGTTAAAAACATAATGTGCATCACACAGCAAATGAGCATAGAAGGCTTTGGCAACATGAAGGAAGGTGATATCAGAATGGAATTCTGTCTTGGGAAAAATTGTCAATAAAACAGAAAAATGTGGCCCTATGCTTGAGCACAGTCTCAATTTTAAGCGCTACTGAGAACATGCCTTGAGATGCTTAAAGGATCTGAGGTTAAAAGCTAAGCTGCCAAGGCTGACACAATTTTTGGAGCCACTTTGGGTAAGAAAATCACTGACACTGTCAACAAGGCACAAGAGCCAGTTCTACAACCTCGGTTTTCATGGGGCACATCAAAGGTTGAGAGGTCAGACCACACAGCGCAGTACCTCATCACACATTCTGCAGCTCCATCCACAGTGAAATTTTATTAATGTTTGTTTTGTTTTTGCTTTGTTCTTGAGACAAAGTCTAACTCTGTCATCCAGGCTAGAGTGCAGTGGCAATATCTTGGCTCATTGCAACCTCTGCCTCCCAGGGTCAAGAGATTCTCCTGCCTCAGCCTCTAGAGTAGCTGGGACTAGAGGTGGGCGCCACCATGTCCGGCTAATTATTTATTTATTTTTATTTTTATTTATTTATTTATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTGGCCAGGCTGGTTTCGAACTCCTGACCTTAGGTGATCCGCCTGTCCCGGCCTCCCAGAGTTCTGGGATTACACATGTGAGCCAATGCCCCCGGCCAGCTTTTGTAAAACTTTGCTTAATTTTTGTTTAATATTTTTTAGGATTTTATATGCATAAGGGTACAGTAAACAGTATGTGTTCACAGTGTTGTTTACTCTATGTGATTACTGTACAATATGTGTGGAGTACTGTACAGTGTGCATGTGCTGTGTGAGTGCTGTACAGTATGCGTGTGCATTATATCTGTACTGTGAGTTGATTTCAGTACAGTAGTGTATTACACAAATATTCTCTAATGAAATATTGTTTTATTATTAAAAAATACTGTATGAAGTATCGTTAACAAAATTATGTATTTATCAGTTGATGAAAACATTGCGACCAGAGGCTCACAGGAACCTAATCTTGTATTTCCCATTGCAGCAGTGGTTCAGTAGTCATTGTTTGGGGCAACCGTATAGAACATAACTATTCCGAATTATGTACCTACATTTTCTCCGTATCAATAGATGATGTGGAGAGTACCTTATTTTTACTCCCTTACGCTCATATCTTCCACTTATTTCAGATTTTATTTATGTGGGGTTTTGTCTTGTTTGCAATGCAAATAATGCTGCAGTGAACTTAGTGTGAAATATCTGAGAGACTGCATCTGTAGAATAGGTTTCAGAAATTGCCATTGCTGGGCCGCAGGAAATACACAACTTAAAGTTTGAGGATATCTTTGGTAATTGTTTTCATTTTTCTTTTCAAATTTATAATCATATTTAAAGCCATTTATCCAGCAGAGGGAGTGAGAGTATCAGAGAGCCATAATAACTGTTGGATCTTCTTTTTCTGAAATAAATTTAAAAGTACCCAAGTATTTTCATAGTTCAGGTTTGCAACCTTGATTTTGTACTTAAAAGTTAGATTGTCTTTTTATATTTTTCTAAAATCATTCTGATGGTATCCTTTGAAGGTGATATAAATCTATAGAATGAATAATTGCTACCACTTTGCTAGTAGTTAGGATAGATTCATATTGATCCTTATAGATTAAGAGTATGGTGAACATAGGGATAATAGCATAATTTGGTTATCCTCTTCTGCTTTTGTGTGTTCCCTTCTTAGGACTGAAAATCCTTCATTGACACTAGGAAGTATTGAAAATTAGACATAAAAATAAAAATGTTTCTCTTTGCTTCTCCATAG
Seq C2 exon
GGTTCAGCACCACCCCCTTCTCCAACACCTAACAAAGAGATGAAGAACAAAGCAGTTCTTTGCAAACCTTTAACAATGACAAAAGCTACTTACTGTAAACCTCACATGCAGACCAAATCTTGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-ZMYM2:NM_003453:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.384
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)