RnoINT0169114 @ rn6
Intron Retention
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37206094-37209620:+
Coord C1 exon
chr15:37206094-37206128
Coord A exon
chr15:37206129-37209490
Coord C2 exon
chr15:37209491-37209620
Length
3362 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TTCTCTTTGCTTCTCTGTAGGGC
3' ss Score
11.07
Exon sequences
Seq C1 exon
ATCAGGGCTGTCAGACGTCCCGAACCAAAATGACA
Seq A exon
GTGAGTATTTCTCAGTTTAGTGTTGTGATGTGATTTATAGTGTAAGTGAAAGTAACTAGGCTGAGTTAATGCGATCACAGTGAAAGGTTTTACTTACTTATTTAGTTTGCTATGTTGAAATAGTGGCAACGTTCAGCTTACTGACTAGTAGCAGAGGCTGCCAGACATAATGAGGGACATAAAGGAACCTTTATAGCCTCTACCCAGATGGTATTGAATTGACAGGAATAGCTTTGATAGGCTTGCTCCCTCTCTGTCTCTGGAGGGCATGGATCAGCCAGTGGTAAACAGAGTTTTCAAGACAAACAGCAGAGGACAAAGTACATGAGCTACACACTAGAGACCAACCTGACATGGGTCTCTTGAGAGGAGAGCAAGGGACGTGAGGTTGAAAGTAGTGATGTAGGGGAGGGGGGGGGAGGGGAGGGAGGGGACGGGGGCTATGGACAGGAAGCCGGGAAGGGGAGTAACATTTGAAATGTAAGTAAAGAAATACATCTAATAAAAATTAGAAAAGTAAAGAAGTAGTAGTGATATTAAGGTCCCTTAGTGGATGGATGGCTAGGTCTATGAGTCTTTTAAACCCAAAAATATGGACATATTTGTTCTCTAATCCTGTTTCTGTTTAGCCTTTTTCTTTCTTGTGGTACAATGCACAAATCCTTAATTACCTGTAATGATTACTAGAGAGCAAAAGCAGTGCTTGACCACACCATGAAGGACAGTGAGGCACTGTCTGCCTTTAGTATGTTGCCTCTTTTGGAGGCACCTTTGTTCAAAAGGTCTGTGCTTCAGGAATTGTTCATTGGCATTAGAAAAAGCCCATGAACCAGCTTATTTGTTTAACATGTGGTTAAACAAATCAAGAAAGATCTGTAGTTCCAACAGAGCTCACCTAGCAGGTTTTCAGAACTCTGATAGTTAGGCTCCAACTTAGAAATTGTGATTTAGAAAATTATTTAGGTGGAGGTAGTTCTAAATAAAAGTAGAAATGACAATAACCTACAAACATACATTCTTTATACCCTTGGGAGGATGTCATCGTGAACTATTAAGAACTGTGTCTCTTTTTTTTGCATTGTAAACTTTTATCTCTGTATCCATAGTCAACAAAGGAGTTTAGCTGGTTTTTGAAATAAGCTAAGATAGGTTCTACTTCTGAGATATACCCTTACAATATTTATTAATAGAATTTCATTTGAGATATGATGTTAGAGATAATCACATACACAATATAAAACTATGGATTAGAGTAAAAAAAAAGCCATAGCCACAATTATCATAAACTGTAAAGTAGTACTTAGTATTATCAGAATTTCCAAGCTGTTAAGCTGACAGTTTTTAAAAATTGTACTAATTTATTTTTAGGTCAGAATCTTATGCCCTATTTACAAAAAGTGTATTGTGTAGCTTTCTGCTTACAGAACAATAATCAGAATTAGCAGAGTGTTAAACCTCGGCTGGTGCCAGCAGTTTGCACATTAGATATGTTGAAAAAGTTGAACTTAAAGGAAGTAAGTTATATAGATACTGGAAGGATCTGGCAGTGTTTTGCAGGAGAATGAAGAACAGCTTTCTAGAGCTTACGTGAGTGTCTGGAGCTCTCAAGGGCACTGGTAAACTTACTAATAGTTTTCCAGTATCTAGCTTTAAATTAATCAATTTCTGCAGCCTTGCCTTTATGTCAATGCTCAGAACAAATTTACAAACTGGTATTGACAGTGCTCTGAATCTATGAACTGTCTGTGTGTCATTCTGTGGGAGATGGGATGAAAAGGCATAGGGATGTCTAAAATATTCTGGAGTCCTACAGCTGGATTATGCCAGAAGGGAGAGAATCTGGCCTTCAGAGCTGAAGAATTAATGTGTTTACCAGGCCAGAATCCTTAGGTTCTAATCATTTCTGGAAACAAAATCAGAATACTTCTCTCCGACACAGTCTAATCAAGTTGAAAATTAAGGCCTGATGTGGTGAGACTTGTAGTCTCAGACACTCAGGAGTTGGAGGCAGGAGGATCAAAATGTCAAGAGCTAAGTGGTCTACAGAGTTAAGTTCAAACCTTAAGGAAACTGAGACCCAACTCAAAAATTTTGTTGCCTTAAATAAGGTTACATGATATAGCCTAGTAGAAGTGCTCTTGCCTAGGGTATTCCAGGACATAAATATTTTTTTAAAACTGTCAGCATTCTTAAAACTTTGAAGGTGTGAGGAAGCTGCAAGTTTTAGTATTTACAAAGAAACTCCCACAGTGCACAACTGCCCATTATTATTACATTACCTCAGCCTGGGAACATCAAACAAATTTCTATTAGCTAATTAATGGAGAAATGTTTGTTAGACTACAAAATTTGAAGGCTCTAAATTCTGGTAACTGGAAAACAGCTCAGCAGTTAGAAGCACTGACTGCTATTGGAGAGGACCTGGGTTTGGTCTTTAGCACTCCCATGGTAGCGCACACCTGCCCATGACTCGAGTTTCAGGGAATCCGATTCCCACTTCTGACTTCCTCAGGCAACAGGCATGCACAGAGGCAAATACTCAAATACATGAAATAAAGATACATAAAAAATTTGGAATCCGTGTAGTTTATGTTGTGCAGTGAATGAGTAGGCAAGGCTTTGGTGACGTGGAAGGAGACGGTACAGCAGGATGGATGTCTTGAAAAGACTGCCAGTGTTATAGAGAAATACGACCTTGTGCTTAAAACACGGCATCAGAGTTAAGCACCACATGTGCTTGTGCTTTGCATAACATACAAGGCCAAGAGCCTTGGCTTGGGAGGGAAAACTAGTGCTGCCAAGTCACAAGCCCTAGTTCAACTAACCTCTCCCTTTGTTTCATCAATTTCATCAGGGTTGAAAGATAAAATCAACCACTGTACAACATAGATCTCAATCTCTACCAGAGTAATACAGTGTTTATAATTAAACCTCAAATGCTGCCCTTTTTGTGTATTTTTAGGACTTTATAGTATCTCTTGAAGGTGACATTATTTTGTAGAATGAATTTCTGCTGCTAACCAGTGTTTAGACCCACATTGACCCTCTAGATTTTGACTGGTAATCTAGGAGTAATAGTATTTGGTTCTACTTTCCTGCTTTCTGTGGAAGTCCACTTAGGAGTTAGAAAACAGCAATGACTCGGGCATGGTGGCACATACCTTCAGTTCAGCACTCTGGAAGCAGACACATGTAAACCTCCATGAGTTTGAGGACAGCTTGGGTTCCAGACCAGTCAGAACTACATAAGACTCTGTCTCAAGAAAGAAAAGAAAGACAGAGATAGAGGGCAGAAAACATGATCAGTACCAGGAAGATGTAAAAATTACAAAAATAAAATGTTTCTCTTTGCTTCTCTGTAG
Seq C2 exon
GGCTCAGCACCACCCCCTTCTCCTACACCAAACAAAGAGATGAAGAACAAAGCGATTCTTTGCAAACCTTTAACAATGACAAAAGCAACTTACTGTAAGCCTCACATGCAGACCAAGTCTTGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734:ENSRNOT00000011684:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.261
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]