GgaINT0106900 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:178289953-178292026:-
Coord C1 exon
chr1:178291992-178292026
Coord A exon
chr1:178290083-178291991
Coord C2 exon
chr1:178289953-178290082
Length
1909 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CTCTTGTTTTTTGTCTGCAGGGG
3' ss Score
10.78
Exon sequences
Seq C1 exon
ATCAGGGCTGTCAAACTCCCCGAACAAAAATAACA
Seq A exon
GTAAGTACATCTATATTATATGTGTATATAACCTAATTAGATGAATTTGAAGTGGAGGTCATGGTGGCTTCAAGGGATGCTATTAAAAATGCCACAAATGAGTATCTTAAAATGATACTGATATAACTGTGGGTTTTGTTAGCCTTTGTTACATCTGAATTATCAGAAATTAACTTTCTGAATGTTCATATGTTCTTTTCAACATCTTTTGGAAAAAGGAATTGGCAGCCACGTGTTTTATGTCTGTACTGCATGAACACATTGCTTAGAAGTTAGTTCACAACGTGTGTGTATTTCTTTTCTTTAGACTGGTGAGATGTGCTTATTGAGTGTAGAAAGGGAAGAGAATTTCCTTGGCCAGTTGGAATATGAAGGTTGTACTGCAGCTTTGAAAGGATGAAAACAAATCTTCAGTTCTTAAACTGTAGTTCCAGAGAGCAGAGCTGTTAGGTACAGGCGCACAGGGTCGGATTGGTGGCAAAGTGGGGAAGCGTGAGCTCCTTGCAGAAGGGCTGTCTGTGATGGTGAGTGGAGCAGCAGCCTTCATTTGGAGTCCATCATTTTTTGACAGCTTGTCAAAAATACAGAATCATAGAATGGCTTGGGTTGGAAGGGACCTTTAAGATCATCTAGTTCCAACCCCCTCCTATAGGCAGGGACACCTCCCACTAGTCCAGGTTGCTCACAGCCCTATCCAGCCTGGCCTTGAATGTCTGCAGAGAGGGGGCATCCACAACCTCTCTGGGCAACCTGTTCCAGTGCATCACCACCCTCACAGTAAAGAATTTCTTCCTAATCTCATTATTAGGAACAACTTTGAACGTTGAGCTTAGTGTATTTTGTTTAAAACTTGGCTTTGTTTTCTTACACAGAAGATCTCAATAGCTGCTACTTCTCAGTGGAAAAATTTGTCTCACCTGAAAACAGGCTTCTGTAAGCTAAATCTTAGACTTAAGTGAAAGTATTTTGGTAGCATTTTATAACATGTTAATGAAAAACACAAAATAAGATTGCTTGGGTAACTGGAAACATGCATAATAGCATTTTAAACCATCATGTTAAAAACACGTAGTATTTTAGATTTAATACCTTCCAATAATATTAATATCTTTAAAAAGAAATGATGGACCATCAGATAAAAACTATTTGTGATTCAGTTACTTATTCACATTTTAGAAGGTGTGCTGCCTGCCATTCCTGTGACTTCACATTCTTTCCATGTGAGGACATGTGAGGCTAATCTTAATGTGATGATCAAAGAAAAGCAGCGTTCTTGGTACTAGTGATCAAAAAATGTATTTGAAGCAAAATATTTTTACCTCTTGACTGTAAGAACACCGTTTGAACATTATGTGGTGTTTCCAAATATGTTGATGCTATTGTAGAGGCAGCAGGGGGAGCTCAGTGTTTGTTCTTTGGATAGTAGAGAGTGTAGCAATAATGTTTTATTCAGAAGTACTTTTTTTTTTGGTAGGTGATTTTGGATTGTGGCCTACCTAAGAAGATCAGACCTTGAGCCAGAACTTTGTTTTGCTGTTCATAGTGAATTATTTTTATAGCTAAAGTTATTATTAAATTATAAAATAGTTTAAGTTGTACTTTCATTTAGACAAGGAATTTCAAAAAAAAAAAACCTGGCAGAAGTTGTGAATTGGAATGCTAGGAATTGAAATGCTAGCCTAGACTAAGCAAAACACAGCTATGTGACACTCCTGGTAGTGGCAGCTCGTTGCTAGAATGCAGAATAGCTTGCAATTAAAGAAAGAAAACATAGTGCTGCTGAGTGCTGTGAGCTTCCTCTTTAGTATCTTGTGCATGGAGAGTATTGACTGACGCTTTAAATTAAAAAACTTTGTGTTGAAATCAATGTAGAGCAACAGCAACGTATTCTCTTGTTTTTTGTCTGCAG
Seq C2 exon
GGGTCAGCACCACCGCCTTCCCCAACCCCTAACAGAGAGATGAAGAACAAGGCTGTTCTGTGCAAGCCTTTGACAATGACAAAAGCCACGTACTGTAAACCTCATATGCAGACAAAATCTTGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000043420:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]