MmuINT0180463 @ mm10
Intron Retention
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56938405-56942127:+
Coord C1 exon
chr14:56938405-56938439
Coord A exon
chr14:56938440-56941997
Coord C2 exon
chr14:56941998-56942127
Length
3558 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TTCTCTTTGCTTCTCTGAAGGGC
3' ss Score
8.25
Exon sequences
Seq C1 exon
ATCAGGGCTGTCAGACGTCCCGAACCAAAATGACA
Seq A exon
GTGAGTATTTTTCAGTTTAGTGCTGTGATATGGTTTATAGTATAAGTGAAAGTAATTAGGCTGAGTTAATATGATCACCATGAAAGGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATACTGTGTTGAAACAGTGGAAACGTTCAGCTTACTTCCTAGTAGCAGAGACTGTCAGGCGTAATGTGAATCATTATAACCTCTGCCCAGATGGCATGTGAATTGACATAGGAATAGCTTTGGTAGGATTGCTCCTCTGTCCCTCTCTGTATTTAGAGGGTATGGATGGGCCAGTGGTAAACAGTTAGGTTTTTAAGGGAAGCAACAAAGGACAAAGTACACAAGCTACACACTAGAGACCAACCTGACATGGATCTCGCTTGGAGGGAAGCAAGGGAAGTGAAGTTAAAAGTAGTGTGATATGAAGATCTCTTAGTGGATGGCTGGATCTATGAGTCTTTTAAACCTGAAAAATATATAATAGAGTCTCTGATCCTATTTTTTTTTTTTTAGCCTTTTCCTTTCTTTTAGTACAATGCAGCAAATCCTTAATTACCTGTAATGATTACTAGGGAGCATAAGTAGTGGTTGGCCATACCATGAAGAACAGTGAGGCACTGTCTGCCTTTAGTATGCCAGCTCTTTTGGAGTTTCTAGCACCCTTGTTCAAAAGGTCTGTGCTAGGGGTTGGAGAGATGGCTCAGCGGTTAAGAGCATTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGAAGCACTCTTCTGGAGTGTCTGAAGACAGCTACAATGTACTCATAACAATAAAATAAAATTGTAAAAAAAAAAGGTCTGTGCTAAAGGAATTGTTCATTGGCATTAGAAAAAGCCTGTGGACCAGCTTATACTATGCTTAAACAAATCAATAAAGATCTGTAGCTCCAACTAAGCTCATCTAGCAGGTTTTCAGAACTCTGAGATACCTAGGCTCCAACTCAGAAATTGTGATTCAGAAAATTATTTAGGTGGTTCTAATATAAAAGTAGAGGTGACAATAACCTACAGACATACATTCTTTATATCCTTGGGTTAGGGCGCCATCATGGCTATTAAGACTTGTATCTTTTTTTTTCCGCATTGTAATCTTTTAGCCCTGTATCCATAGTCAAGAGAAGCTTAGCTGATTTTTTTTAAATAAGCTGAAATGTGTTCTATTTCATATATATATTCACACACACACACCCCACACACTATTAATAGAATTTCATTTGAGGTATGATTTAAGTGATAATAACATGCACAATATAAAACTATGGATTAGAGTAATAAAAAAGGCACAGCCACAATTACCATAAACTAAAAAGTAGTATTTAATATTATCAGAATTCCCAAGCTTTTAAGCTGACAATCAGTTTTCCAAAATTGTACTAATTTATTTTTAATGACCTGTTTAGAAAAAGTGTAATGAATAGCATGGCTTTGTAGCTTTCAAATGCTTATAGGATGATAATCAGAATTAGAACATTAAACCTCAGCTAGTGCTGACTGTTTACACATTTGATATGTTGAGAAAGTTGAACTTGAAGGACGTAAGTTATGTAGATACTGTAGAAGAATCTGGCAAGTGTTTTACAAGAGAATGTGAAGAACAGCTTTCTAGAGCTGACAGGAGTGTCTGGTGCTCTCAAGGGCATTGGTAAACTTACTAATAGTTCTCAAGTATCTAGCTTTAAATTACTCAGTTTCTGCAGCCTTGCCATTATATCAGTGCTCAGAACAACTTTACAAGCTCATATTTATAGTGCTCAGAATCTGTGAACTGTCTATGTCATTCTGTGGGAGATGGGGTGAAAAAGCATAGGGATGTCTAAAATCGTCTGTAGTTCTACAGCTGCATCATGCTAGAAGGGAGAGACCCTGGTTTTCAGAGTTGAAGAATTACTTTCCATTAGGCTAGAATTCTTAGGTTCTAGTCATTTGTGGAAACAAAATCAGAGTGTCCTTCACTTCTCTCCCACTCAGTGTAATCAGTTTGAAAATTAAGGCTTGATGTGGCCGAGACTTGTAGTCTCAGATACTCAGGAGTTGGAGGCAGGAGGATCAAAACGTCAAGACCTAAGTGGTTTACAGAGTTAACTTCAAACCTTAAGGCTAACCTAGGAAACTGAGACCCAACTCAAAAAATTTGTTGCATTAAATAAGGTTACATGATACAGCCTAGTAGAAGTGTATTTGCCTAAGGTGTGCCAGGATATACATTTTTTTTAAACGATTTGCATTCTACAAACTTTGAAGGCATGAGGAAGCTGCAAATCTTAGTGTTAGCAAAGAAACTCCCACAGTGGACAACTGCCCAATATTATTACATTAATTCAGCCTGGGGCAGCACCAAACACATTACTATTAGCTAATTGATGGAGAAATGTTTGTTAGAGTAAGGAGTTTTGAAGGCTCTGAATTCTGGTAACTGGAAATAGAAATGTTAAAACATAATTTAGGGGCTGGAGAGACAGCTCAGCATTTAAAAGTACTTACTGCTCTTGGAGAGGACCTGGGTTTGGTTTCCAGCACACATGGTAGCTGGAACAACGATCCATTACTCCAGTTTCAGGGGATCTGATGTCCACTTCTGACCTCTTTAGGCACCAGGCACACACATGATACATACATGCACACAGGCAAATACTCATATACATGAAATAAAGATACATAAAAAATGTTAAAGTCCACATAGTTTATGTTGTGCAGTAAACGGGTAGGAGAGGCTTTGGTGGGTACAGACAGAATGGATGTCTTGAAAAAACTGTCAGTGTTAAGGAGAAATATGACTCTGTGCTTAAAACACGGCGTCAGAGCTAAGTACCACATGTGTATATGCTAAGTGCCACATGTGTATATGCTTCGTATCATAGTGCCTAGAAATTGGAGGCAAATCAATCAACCATAGGAGACTAAAAGAGTTGGCTTGGGAGGGAAAACTGGTTGCTGCCAAATCATAAGCTCTAGTTCGGCTAACCTCTCCCTTGGTTTTATGAATTTCATAAACCTCTATATCATAGACCTCAAGCTCTACCAGAGCAAAACTTAGTGTATTTATAATTAAACTTGTAAGTCTTTGTTCTGTGTATTTTCAGGATTTTAATTTATAGTGACATTACTCTGTAGAGTGAATTCCTGCTGCTAACCAGTGTGTTTAGATCCACATTGATCCTCCAGATTATGACTGGTAATCTAGGAGTAATAATATTTGGTTATACTTTCCCACTTTTTGTGGAAGTCCACTTAAGCGTTGGAAAGCAGACAGTGAGCTGGGCATGATGGCACATTTCAGCACTCTGGAGGCAAAGGCATGTAAATCTCCATGAGTTTGAGGACAGTTTGGTCTGCGTTCCGAGTTCTAGGCCAGTCAGAACTATATAGTAAGACTCTGTCTCAAGAAAGAAAAGAAGAAAGACAGGAATAGAGGAAAGAAAACATGATCAGTACCAGGAAGATGTTAAAATTACAAAAATAAAATGTTTCTCTTTGCTTCTCTGAAG
Seq C2 exon
GGCTCAGCACCACCCCCTTCTCCTACACCAAACAAAGAGATGAAGAATAAAGCAATTCTTTGCAAACCTTTAACAATGACAAAAGCAACTTACTGTAAGCCTCACATGCAGACCAAATCTTGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945:ENSMUST00000022511:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types