BtaEX0041041 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110986330-110988583:-
Coord C1 exon
chr3:110988061-110988583
Coord A exon
chr3:110987729-110987910
Coord C2 exon
chr3:110986330-110986391
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTATCCTTGTTCTTTGCAGAGT
3' ss Score
10.56
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
Exon sequences
Seq C1 exon
GTCTGAAGATATAGACCACAACTTAACTCCTACCCTTGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTGGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAATTCATACTGATGATAGCTTGGAAGTAGAGAGAAGAGTCACACAGCATGAATCAGACAATGAAAATGAAATACAGATTCAAAATAAATTAAAAAAAGACTTTCCTAAACAGTTTGATCAGGTTTCTGTCTTTAAATCAATACGGAAAGATTTTAGTCTAGTAAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATCATGAACGTGAAAAACGGTTGGATAAACCCCATAAAGAGTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAG
Seq A exon
AGTGACTGAATTTCTCCCAGTAACTATTGGTAATGGTATAAATGGTTGAAAAATAGCTCTAAACCTCATTTCTCCCTCCCCTGGTTGCAATATTTTGATGAGAAGGCAAGATACTCGAATCACCTGTTCATTTTCTTTGGTTGAACATTGGAACCTGAAGTTGGATTTAACTTCTTTGTGCT
Seq C2 exon
CTAATCAAGTTGAAGAAACATTACATACCCATTTACCACAAACCCCAGAAACAAACTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023_MULTIEX1-3/5=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=0.000 C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000027998fB7947
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTTGATCAGGTTTCTGTCT
R:
AGTTTGTTTCTGGGGTTTGTGGT
Band lengths:
248-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development