HsaEX0072913 @ hg38
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35358925-35361065:+
Coord C1 exon
chr1:35358925-35359446
Coord A exon
chr1:35359596-35359777
Coord C2 exon
chr1:35360965-35361065
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCTTGTTCTTTGCAGAGT
3' ss Score
10.93
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
Exon sequences
Seq C1 exon
AATGTCTGAAGATATAGACCACAACTTAACTCCTACCCTTGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTGGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAATTCATACTGATGATAGCTTGGAAGTAGAGAGAAGAGTCACACAGCATGAATCAGACAATGAAAATGAAATACAAATTCAAAATAAGTTAAAAAAAGACTTTCCTAAACAATTTGATCAGGTTTCTGTCTTTAAATCAATACGGAAAGATTTTAGTCTAGTAAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATGAACGTGAAAAACGGTTGGATAAACCCCATAAAGATTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAG
Seq A exon
AGTGACTGAATTTCTCCCAGTAACTTTTGGTAATGGTATAAATGGTTGAAAATAGCTCTAAACCTCATTTCTCCCTCCCCTGGTTGCAATGTTTTGATGAGAAAGGCAAGATACTTGAATCACCTGTTCATTTTCTTTGGTTGAACATTGGAACCTGAAGTTGGATTTAACTTCTTTGTGCT
Seq C2 exon
GTTTGAGCAAGGAAAAAATGTAGGGTAAGGCTAAAAGCTAGGTGGGGCCAGATTGTGCAGAACTTTGAGTGAAAATACCTTTTGGGTGTTTTTGGGACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'35-24,'35-23,36-24
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENST00000314607fB8040
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTTGATCAGGTTTCTGTCTT
R:
AAGTTCTGCACAATCTGGCCC
Band lengths:
253-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development