BtaEX0041097 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000039782 | ZNF12

Description

zinc finger protein 12 [Source:HGNC Symbol;Acc:HGNC:12902]

Coordinates

chr25:39051002-39055715:-

Coord C1 exon

chr25:39055562-39055715

Coord A exon

chr25:39054972-39055067

Coord C2 exon

chr25:39051002-39052839

Length

96 bp

Sequences

Splice sites

3' ss Seq

TCTCTTGTATCTATTAACAGGGT

3' ss Score

9.34

5' ss Seq

CAGGTGTGT

5' ss Score

6.99

Exon sequences

Seq C1 exon

CCAGTTCCCACTATGGTGCCATTACAGGGGTCAGTGTCATTCAGGGACGTGGCCGTGGACTTCACCCAGGAGGAGTGGCAGCACCTAGACCCTGAGCAGAAGACGACCTACAGGGACGTGATGCTGGAGAACTACAGCCACCTCATCTCTGTGG

Seq A exon

GGTGTCACATTATCAAACCAGAAGTCATCACCAAATTGGAGCAAGGAGAAGAGCCGTGGGTGGTGGAAGGAGAATTCCTGCTTCAGAGTCACCCAG

Seq C2 exon

AAGAAGTCTGGAAAGTTCATGATCTGATGGAGGGAAGCCAGGAAAATGAAGACAAACATTCAAGGCAAACTGAATCCATTAACAACAAAACCCTGCCTGAAGGGAGAGGTAATGGTCTTGGTAAGACTTGTAATGTGGAAACAAGCCCTGTTTCTTCAAGAAAAATATCCTATCAGTGTGATTCATGTGAAAAGAGTTTAAAGTCTATTTCAGAATATATTAGTAGTGATGGCAGCTATGCAAGAATGAAACCTGATGAATGTAGTGCTTGTGGGAGATCACTTCTCCATGTGAAGCTTGAAAAAATTCATCTCGGAGATAAACCTTATGAATTTAACCAAAACAGGGAGGCTTATGCTCTAAATGAAGAAAGTATTTATCAGAACATTCACATTTTGGAGAAACCCTTTGAATATATCGAATGCCAGAAAGCCTTTCAGAAGGATACAGTGTTTGTTAACCATATAGAGGAGAAACCCTACAAGTGGAACGAATCTGAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000039782-'3-3,'3-2,4-3

Average complexity

C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.231 A=0.030 C2=0.064

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=78.8)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)

Main Inclusion Isoform:

ENSBTAP00000052950