HsaEX0073010 @ hg38
Exon Skipping
Gene
ENSG00000164631 | ZNF12
Description
zinc finger protein 12 [Source:HGNC Symbol;Acc:HGNC:12902]
Coordinates
chr7:6688433-6697811:-
Coord C1 exon
chr7:6697685-6697811
Coord A exon
chr7:6697339-6697434
Coord C2 exon
chr7:6688433-6692703
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTTCATTTCTCATTAACAGGGT
3' ss Score
10.37
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGGCCAGTGTCATTCAAGGACGTGGCTGTGGACTTCACCCAGGAGGAATGGCAGCAGCTGGATCCTGAGCAGAAGATAACTTACAGGGATGTGATGCTGGAGAACTACAGCAATCTAGTTTCTGTGG
Seq A exon
GGTATCACATTATCAAACCGGATGTTATCAGCAAGTTGGAGCAAGGAGAAGAGCCATGGATAGTAGAAGGAGAATTCCTACTTCAGAGCTATCCAG
Seq C2 exon
ATGAAGTCTGGCAAACTGATGACCTAATAGAGAGAATCCAGGAAGAGGAAAATAAACCTTCAAGGCAAACTGTGTTCATTGAGACCCTGATTGAAGAGAGAGGTAATGTTCCTGGTAAAACTTTTGATGTAGAAACGAACCCTGTTCCTTCAAGAAAAATAGCCTATAAAAATAGCCTCTGTGACTCATGTGAAAAGTGTTTAACGTCTGTTTCAGAATATATTAGTAGTGATGGAAGCTATGCAAGAATGAAAGCTGATGAATGTAGTGGATGTGGGAAATCACTCCTCCATATTAAGCTTGAGAAAACTCATCCAGGAGATCAAGCTTATGAATTTAATCAAAATGGGGAACCTTATACTCTAAATGAAGAAAGTCTTTATCAGAAAATTCGTATTTTGGAGAAACCTTTTGAATATATTGAATGCCAGAAAGCCTTCCAAAAGGACACTGTTTTTGTTAATCACATGGAAGAAAAGCCCTATAAGTGGAATGGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164631_MULTIEX1-5/6=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.040
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACTTCACCCAGGAGGAA
R:
TGAACACAGTTTGCCTTGAAGGT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development