BtaEX0041134 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032018 | ZNF19
Description
Bos taurus zinc finger protein 19 (ZNF19), mRNA. [Source:RefSeq mRNA;Acc:NM_001083460]
Coordinates
chr18:39727971-39736198:+
Coord C1 exon
chr18:39727971-39728229
Coord A exon
chr18:39730642-39730768
Coord C2 exon
chr18:39732542-39736198
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAGGAACCTCTTGTTTTAGGAG
3' ss Score
3.65
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CCCCTGCCCTTCATTGAGAGAGAGCTCAATAATGGCTGTCATGCCCCTGAAAGTCTGGCACCAGGTGAGCTGTGATTCCCTCAGGTCAGCCTTGGAGAGATCTGATGTGAAGAAAGAGGGGGATGAGAGAGATGATTCTGGCAAGAAGTCTTAGAGCCTAAGCAATCGGAAGACCCTTGTTGATTCTCATCAGTAGGACTGGATGCTGGGGGAAAGCTGATGACGTGGGAATGAGCAGCCAGAAGTCCAGCAACAGTGG
Seq A exon
GAGGTAGTGACCTTTGAGGATGTGGCTGTTTACTTCACCCGGACAGAATGGGCTGGCCTTTCTCCTGCACAAAGGGCCCTGTACAGAAGTGTGATGCTGGAGATCTATAGGAGCTTGACATCCTTGG
Seq C2 exon
ATTCCAGGACCCACATGGACAGTGAGTTAACACCAACATGGGGAATTTCTGAAGAAAGAGACTTGATGATGTCACATGGGCCACAGAAGAATGTTCTTAACAAAAGCAGCTTCCTAGAAACATGTGAACTGGAGCAACACCAGGAAATCCCCACAGTGAAAAATATTAGAGGAAAGGTTCTAAGAATCCACTACGATAGGAAGCCCTTCAGATGTGAGGAGTGTGGGAAATGCTTCAGCTATTTTTCTTACTATGTTAGACATCAGAGAATCCACACTGGGGAGAAACCCTTTGAGTGTAATGAGTGTGGAAAAGCCTTTAATGGCAATTCTTCATTAATTCGACATCAGAGAATCCACACCGGTGAGAAACCCTATCAGTGTGAAGAGTGTGGGAGAGCCTTTAATGATAATGCAAATCTGATCAGGCATCAGAGAATCCACAGTGGGGACAGACCTTATCTCTGTAGGGAGTGTGGAAATGGTTTCACCAGTAGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032018_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.9),PF0172213=BolA=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.2),PF0009621=zf-C2H2=WD(100=6.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGCCCCTGAAAGTCTGG
R:
TGTCCATGTGGGTCCTGGAAT
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development