BtaEX0041135 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032018 | ZNF19
Description
Bos taurus zinc finger protein 19 (ZNF19), mRNA. [Source:RefSeq mRNA;Acc:NM_001083460]
Coordinates
chr18:39727971-39736198:+
Coord C1 exon
chr18:39727971-39728229
Coord A exon
chr18:39731313-39731426
Coord C2 exon
chr18:39732542-39736198
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCATTTTCTGCCCTTTTCAGGAT
3' ss Score
12.18
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CCCCTGCCCTTCATTGAGAGAGAGCTCAATAATGGCTGTCATGCCCCTGAAAGTCTGGCACCAGGTGAGCTGTGATTCCCTCAGGTCAGCCTTGGAGAGATCTGATGTGAAGAAAGAGGGGGATGAGAGAGATGATTCTGGCAAGAAGTCTTAGAGCCTAAGCAATCGGAAGACCCTTGTTGATTCTCATCAGTAGGACTGGATGCTGGGGGAAAGCTGATGACGTGGGAATGAGCAGCCAGAAGTCCAGCAACAGTGG
Seq A exon
GATACCCAGTTCCCAAACCTGCGTTAATCTCACTTCTAGAGAGAGGGGATTTGCCTGTGGGCCTGGAGACACAGGATAATCCTCCTGCACAGGGTACCAGAGACATCTATAAAA
Seq C2 exon
ATTCCAGGACCCACATGGACAGTGAGTTAACACCAACATGGGGAATTTCTGAAGAAAGAGACTTGATGATGTCACATGGGCCACAGAAGAATGTTCTTAACAAAAGCAGCTTCCTAGAAACATGTGAACTGGAGCAACACCAGGAAATCCCCACAGTGAAAAATATTAGAGGAAAGGTTCTAAGAATCCACTACGATAGGAAGCCCTTCAGATGTGAGGAGTGTGGGAAATGCTTCAGCTATTTTTCTTACTATGTTAGACATCAGAGAATCCACACTGGGGAGAAACCCTTTGAGTGTAATGAGTGTGGAAAAGCCTTTAATGGCAATTCTTCATTAATTCGACATCAGAGAATCCACACCGGTGAGAAACCCTATCAGTGTGAAGAGTGTGGGAGAGCCTTTAATGATAATGCAAATCTGATCAGGCATCAGAGAATCCACAGTGGGGACAGACCTTATCTCTGTAGGGAGTGTGGAAATGGTTTCACCAGTAGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032018_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.385 C2=0.047
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.9),PF0172213=BolA=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.2),PF0009621=zf-C2H2=WD(100=6.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGCCCCTGAAAGTCTGG
R:
TGTCCATGTGGGTCCTGGAAT
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development