BtaEX0041136 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007074 | ZNF192
Description
Bos taurus zinc finger protein 389 (ZNF389), mRNA. [Source:RefSeq mRNA;Acc:NM_001145131]
Coordinates
chr23:30286727-30299128:-
Coord C1 exon
chr23:30294257-30299128
Coord A exon
chr23:30287323-30287426
Coord C2 exon
chr23:30286727-30287238
Length
104 bp
Sequences
Splice sites
3' ss Seq
GCCATGTTCCACATCCCCAGGAG
3' ss Score
7.68
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
TCCACCGCTACCCCAGCTACCGCCTGCTCCCAGCCCTGGCCTCCGCAAGCCCTCGGATCAGCTCTCCGGGGGACCTTTACGTCCCCAGCGAGTGTGCGGAGCAGGGTCGTTGGCCCCAGTGCGCGAGGCGGAAGTGACGCCACAGTCCGTTATTTATCACAACTTTCCCGGCGCCTTAGAGCCGCGCGCAATCCTGCGACGCGTAGACGCAAAAAGACAGCGAGGCCTAGCGTTCGGTTGTGAGGGGCGTGGTGGCCCAGTTGGCTCATTGGTCCGACCATAGAGCTTTCAGACCTCCAGGATTCCTAGAGAGCTCCCGGAAGTGGCTTGGGGCAACATGCATGTTGGCCGGCGGTGTGCCTCTTCACGTCTGGAAGTTAGGGGCTGGAGGGTCCTGGGCCGGCTGCTGCTTTCGCACCTCTCTTCTTGCAGCCGTTCCTGTGGGTCTGTCCACCGTTTGTAGCATCCTTCCCCACCGCGGGCCGCCCCTGGAACTCACG
Seq A exon
GAGAGAAAGCAGAAGGAATTCCCAGATGGAATTGGCATGGCAGAAGGCTAAGAAGGCAAGGAGTTATTTCTGGAGAGGATCACTTAAATGACATCCATGTCATG
Seq C2 exon
AAGTACCCTTAAAGAAGAGGCCCTCAGAAGGTTCTTCTCTTAAGAAGATAAAGAAACATAGTAGAAACGAGTCTCCTGAGCTTTTCTGGCCCTAAATGGCAGCAGAATCAAGAAAGTCTTTAGCCCCATCCCCACCAGACCAGGTTCCTGAAGAGGACCTTGTAATTGTCAAGGTAGAGGAAGATCATGGTTGGGACCAGGAATCAAGTCTACATGAAAATAACCCTCCTGGCCAAGAGCTGTTCCGCCTACGCTTCAGGAAGTTATGCTACCAAGAGACACTAGGACCCCGAGAAGCTCTGATCCAACTCCGCGCACTTTGCCATCAGTGGCTGAGGCCAGATTTGAACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTAGAGCAGTTCTTGACTATCCTGCCTGAGGAGCTCCAGACTCTGGTGAAGGAACATCAGCTAGAGAATGGAGAGGAAGTGGTGACCCTACTGGAGGATTTGGAAAGGCAAATTGATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007074_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.232
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCACCTCTCTTCTTGCAG
R:
TCTTCAGGAACCTGGTCTGGT
Band lengths:
243-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development