BtaALTA0033873-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000007074 | ZNF192
Description
Bos taurus zinc finger protein 389 (ZNF389), mRNA. [Source:RefSeq mRNA;Acc:NM_001145131]
Coordinates
chr23:30286727-30294439:-
Coord C1 exon
chr23:30294257-30294439
Coord A exon
chr23:30287236-30287238
Coord C2 exon
chr23:30286727-30287235
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GTCATTTTCTGTCCCCAAAGAAG
3' ss Score
5.14
Exon sequences
Seq C1 exon
CGGAAGTGGCTTGGGGCAACATGCATGTTGGCCGGCGGTGTGCCTCTTCACGTCTGGAAGTTAGGGGCTGGAGGGTCCTGGGCCGGCTGCTGCTTTCGCACCTCTCTTCTTGCAGCCGTTCCTGTGGGTCTGTCCACCGTTTGTAGCATCCTTCCCCACCGCGGGCCGCCCCTGGAACTCACG
Seq A exon
AAG
Seq C2 exon
TACCCTTAAAGAAGAGGCCCTCAGAAGGTTCTTCTCTTAAGAAGATAAAGAAACATAGTAGAAACGAGTCTCCTGAGCTTTTCTGGCCCTAAATGGCAGCAGAATCAAGAAAGTCTTTAGCCCCATCCCCACCAGACCAGGTTCCTGAAGAGGACCTTGTAATTGTCAAGGTAGAGGAAGATCATGGTTGGGACCAGGAATCAAGTCTACATGAAAATAACCCTCCTGGCCAAGAGCTGTTCCGCCTACGCTTCAGGAAGTTATGCTACCAAGAGACACTAGGACCCCGAGAAGCTCTGATCCAACTCCGCGCACTTTGCCATCAGTGGCTGAGGCCAGATTTGAACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTAGAGCAGTTCTTGACTATCCTGCCTGAGGAGCTCCAGACTCTGGTGAAGGAACATCAGCTAGAGAATGGAGAGGAAGTGGTGACCCTACTGGAGGATTTGGAAAGGCAAATTGATATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007074-0-4,0-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.237
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTTCTTGCAGCCGTTCC
R:
TGAGGGCCTCTTCTTTAAGGGT
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development