Special

MmuALTA0020518-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000063894 | Zfp192
Description
zinc finger protein 192 [Source:MGI Symbol;Acc:MGI:1913815]
Coordinates
chr13:21618388-21622989:-
Coord C1 exon
chr13:21622814-21622989
Coord A exon
chr13:21618888-21618890
Coord C2 exon
chr13:21618388-21618887
Length
3 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ATCATTTTCTGTTCTGGAAGAAG
3' ss Score
1.28
Exon sequences
Seq C1 exon
GCTTCCGGAAGTGGCTGTGGGGCAAGATGCGTGCTGCCCGGCTCTGCGGCTCCAAGGGTTTGGAACTTAGCGGCTGCAGGGGTCCCGCTCGGGTTCGGTGTCCGTCGCGTCTCCTCGCGCGCTTCCCTGTCCGCGCTGTGCCGCCTCCCGCCCTCGGGCAGCGTGGGGAGCTCTCG
Seq A exon
AAG
Seq C2 exon
TGCCCTGGAGGTTCTTGGAAGACTTGTAAGAAGATACAGAAGGTAGAGGAAAGAGATCTTCTGAGCTTTACTGGCCCTAAATGGCTACAGAACCAAGAAAGCCTTCTTCAGCCCCATCTCCACCAGACCAGGCTCCTGAAGAGGATCTTGTCATTGTCAAGATAGAGGAGGATCATGGTTGGGATGAGGAATCCGGTGTGCATGAGAACAACACACCTGGCCAAGAACTGTTTCGTCTACGCTTCAGACAGCTCTGCTACCAGGAGACATTAGGACCTCGGGAAGCTCTGATCCAGCTCCGTGCATTTTGCCATCAGTGGCTGCGGCCAGACTTGAACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCTCTGGTTAAGGAGCACCAGTTACAGAATGGAGAGGAGGTGGTAACCCTATTGGAGGACCTGGAAAGGCAAATTAATGTCCTAGGGCGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063894-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.293
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0202312=SCAN=PU(97.9=67.1)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000040248





     
                   









    
Main Skipping Isoform:
ENSMUSP00000127704





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000106107
          









    
Other Skipping Isoforms:
ENSMUSP00000116058
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr6:28116092-28116093 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr23:30286727-30287238 
ALTERNATIVE
BtaALTA0033873-2/2
(ZNF192)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGTCCGTCGCGTCTCCTC

				
R: 
TCTTCCAAGAACCTCCAGGGC

				
Band lengths: 
100-103

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"