BtaEX0041159 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027431 | ZNF226
Description
Bos taurus zinc finger protein 226 (ZNF226), mRNA. [Source:RefSeq mRNA;Acc:NM_001102350]
Coordinates
chr18:52494075-52498215:+
Coord C1 exon
chr18:52494075-52494244
Coord A exon
chr18:52495927-52495988
Coord C2 exon
chr18:52498089-52498215
Length
62 bp
Sequences
Splice sites
3' ss Seq
GCTTCTTTGTCCTTCCCCAGTTA
3' ss Score
8.64
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAAGCACTGAGTCACCCCGCGCTAGTGCCTCGGAATGTCCGCTGCAGTTTATACAGGAAACGTGAGACGAACACAGTCATTCTGTCCCACCGCATCGTTTTCATCGCCCGTCTTGAATCCGGAAGGGAGGGAAAGGAAGGACTTCCTGCCTCCTCAGAGCATAGCCGCAG
Seq A exon
TTATGCCTTCTCAGGACTCTGACTTTCCCCAGAAGGAACATGAGAAAATGACCGAGTTTCAG
Seq C2 exon
GAGGCCGTGACCTTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGTTACTGGACTCGGCCCAGAGGAAGCTGTACCAGGATGTGATGGTGGAGAACTTCCGGAACCTGGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027431_MULTIEX1-9/10=8-10
Average complexity
S
Mappability confidence:
83%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.850 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACCGCATCGTTTTCATC
R:
AGCTCCTCCTCAGTGAAGACC
Band lengths:
136-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development