HsaEX0073207 @ hg19
Exon Skipping
Gene
ENSG00000131115 | ZNF227
Description
zinc finger protein 227 [Source:HGNC Symbol;Acc:13020]
Coordinates
chr19:44717243-44732725:+
Coord C1 exon
chr19:44717243-44717397
Coord A exon
chr19:44721944-44722005
Coord C2 exon
chr19:44732599-44732725
Length
62 bp
Sequences
Splice sites
3' ss Seq
GCGTCTTTGGTCTCCCCCAGTTA
3' ss Score
8.26
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GATTGAGTCATCGGGCTCCAATGCGTGGGGATGTTTACCGCCGTTTATCCGGGATAGAGACTCCATCGTGCTGACAGCATCCTTTTATTCACCGCCTCCGAATTTGCAAAGAGGAGGAAGGAGGGACTTCTTGGCTTCTCCCAGCATAGCCCCAG
Seq A exon
TTATGCCATCTCAGAACTATGACCTTCCCCAGAAGAAGCAGGAGAAAATGACCAAGTTTCAG
Seq C2 exon
GAGGCTGTGACATTCAAGGATGTGGCTGTGGTCTTCTCCAGGGAGGAACTGCGACTGCTCGATCTTACCCAGAGGAAGCTGTACCGAGATGTCATGGTGGAGAACTTCAAGAACCTGGTTGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131115-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.600 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAGGAGGAAGGAGGGA
R:
CGGTACAGCTTCCTCTGGGTA
Band lengths:
136-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)