BtaEX0041185 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040336 | ZNF268
Description
Bos taurus zinc finger protein 268 (ZNF268), mRNA. [Source:RefSeq mRNA;Acc:NM_001083646]
Coordinates
chr17:45191911-45209556:+
Coord C1 exon
chr17:45191911-45191973
Coord A exon
chr17:45195018-45195133
Coord C2 exon
chr17:45209365-45209556
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGATAACAATGTTGTGATAGTTT
3' ss Score
2.82
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GGTTGGCGTTTGCATGGAGTTCTCTCTCCCCATCCCGCTGCCAAACCACTGGGCCTCCTTTAG
Seq A exon
TTTTCAGGTGGACAGCAAAGGTTCTCAGCCATACATACACATGTATCCATTCTCCTCTAAACTCCCCATCCCATCCAGGCTGCCATGTAACATTGAACAGAGTTCCCTGTGCTATA
Seq C2 exon
GTGCCACCTCTCCAGGAGCGAGACAGTTCATGCAATGTGAGCAGAAAGCTCCAAAGTGAGAAATCCATCCTGGATCAAGGGACCCCTGACCAGAAGCCTCTCTCTGGAGGACCCTGGCAGAGGCCCAGGAGACCTGGGGTCCTGGAGTGGCTGCTTATTTCCCAGGACCAGCCGAAAGCCAAGAAATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040336_MULTIEX1-3/3=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000056095fB7984
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCGTTTGCATGGAGTTC
R:
ATTTCTTGGCTTTCGGCTGGT
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development