BtaEX0041213 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53711815-53739855:+
Coord C1 exon
chr10:53711815-53712667
Coord A exon
chr10:53720461-53720637
Coord C2 exon
chr10:53739709-53739855
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTACTACCATTATAGGTT
3' ss Score
8.3
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
CTTTTTAATGGCGCCTCTCTTCTTAGACCTTCTTACTTTCCAAGCTTACGGAAAACTAGCTGTTACACACAGGGAGGTCCTGGAACTCGCTTTTCCACGTCTTCAGATTCGATGCGGCCCCGGTTTCGGGATTGCTGGCCAGGGAGTAGGTGGCACCCACGACCGCTCCGACCCCGACCCAGTCCCTGGCAATCGGCGGCGGCTCGCTCGTGGAGAGCCACCGGATCCTTCGAGGGCTCGCGACGCGGTGCACATGCCCGCGCCCGCCTCCCGCGTCGGCGAGAAGAAAGGGAGTCCGGACGCGCAGAGGCTGACCCGGAGCCTACCCATGAGGCAGCGCGCTGGCTCCACGAGAGCCCCCCCTGCCCACGGCTCGGCCGCCTGCTCCGCAATGGGAGCCGCCGCCGTCGCTGCCGTGTAGTTTTTCGTGCTCCTCCTTTTCCTCCTCCTCTTTCTCCTCCTCCTCAGGGCCCCAGTCAGGCCGATCCGCTCCGCTCACG
Seq A exon
GTTTTCCACTTCTTTGCATTCCTTCGCTAATGGAGTAAGGGTTCTACAAGGCCTTCCCTTTACCATGTATCTATTAACATCCTATGAAGCTGGATTTCCCTCACTTCAACAGAACAAGGTAGTATAACAGATTGAATACAGAAGCAGATAAGGGAATCCAGCTGTCTCTGAACACAG
Seq C2 exon
ATAATTCAAAAATGGCAGAGCTCTTTATGGAATGTGAAGAAGAAGAGTTGGAACCATGGCAGAAGAAAGTAAAAGAGGTTGATGATGATGATGATGATGAACCGATCTTTGTTGGAGAGATATCAAGTTCAAAACCAGCAATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486_MULTIEX1-1/6=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGAAAGGGAGTCCGGA
R:
ACATTCCATAAAGAGCTCTGCCA
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development