BtaEX0041215 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53711815-53739855:+
Coord C1 exon
chr10:53711815-53712667
Coord A exon
chr10:53731435-53731480
Coord C2 exon
chr10:53739709-53739855
Length
46 bp
Sequences
Splice sites
3' ss Seq
TAGTTATCTTTATTTTATAGTAA
3' ss Score
4.68
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CTTTTTAATGGCGCCTCTCTTCTTAGACCTTCTTACTTTCCAAGCTTACGGAAAACTAGCTGTTACACACAGGGAGGTCCTGGAACTCGCTTTTCCACGTCTTCAGATTCGATGCGGCCCCGGTTTCGGGATTGCTGGCCAGGGAGTAGGTGGCACCCACGACCGCTCCGACCCCGACCCAGTCCCTGGCAATCGGCGGCGGCTCGCTCGTGGAGAGCCACCGGATCCTTCGAGGGCTCGCGACGCGGTGCACATGCCCGCGCCCGCCTCCCGCGTCGGCGAGAAGAAAGGGAGTCCGGACGCGCAGAGGCTGACCCGGAGCCTACCCATGAGGCAGCGCGCTGGCTCCACGAGAGCCCCCCCTGCCCACGGCTCGGCCGCCTGCTCCGCAATGGGAGCCGCCGCCGTCGCTGCCGTGTAGTTTTTCGTGCTCCTCCTTTTCCTCCTCCTCTTTCTCCTCCTCCTCAGGGCCCCAGTCAGGCCGATCCGCTCCGCTCACG
Seq A exon
TAAAGAAAACTGAGGTATAACTTGCTGCCTTGTATGGAGTCACATG
Seq C2 exon
ATAATTCAAAAATGGCAGAGCTCTTTATGGAATGTGAAGAAGAAGAGTTGGAACCATGGCAGAAGAAAGTAAAAGAGGTTGATGATGATGATGATGATGAACCGATCTTTGTTGGAGAGATATCAAGTTCAAAACCAGCAATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486_MULTIEX1-3/6=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCCTTTTCCTCCTCCT
R:
TGCCATGGTTCCAACTCTTCT
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development