RnoEX6036455 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78858570-78872634:+
Coord C1 exon
chr8:78858570-78858703
Coord A exon
chr8:78872102-78872145
Coord C2 exon
chr8:78872573-78872634
Length
44 bp
Sequences
Splice sites
3' ss Seq
TAGATATCTTTATTTTCTAGAAA
3' ss Score
6.98
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CATCGCGGCGCCCGGCAGCCCGCTCCGCGATGGGAGCCGCAGCGGTTGCGGCGTACAGCCCGCGCTCCTCCCTCGCCTCCTCCTCTTTCTCCTCCTCCTCAGGGCTCCAGTCAGGCCGAGCCGCTCCGCTCACG
Seq A exon
AAAGGCAAACTGAGATACAACTTGCTGATTTTTGTGGTCACATG
Seq C2 exon
GTGACAACGTATAGAAAGTCAGATCTACAACTTGATGGGTGACAGTTCCTTTCAACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631-'0-3,'0-1,2-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.725
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGCCCGCGCTCCTC
R:
AGGAACTGTCACCCATCAAGT
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]