MmuEX0053167 @ mm9
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72122706-72176969:+
Coord C1 exon
chr9:72122706-72122836
Coord A exon
chr9:72143086-72143129
Coord C2 exon
chr9:72176835-72176969
Length
44 bp
Sequences
Splice sites
3' ss Seq
TAGATATCTTTATTTTCTAGAAA
3' ss Score
6.98
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGCGCCCAGCAGCCCCGCTCCGCGATGGGAGCCGGAGCGGCCTCGGCGTACACAGCCCGCGCTCCTCCCTCGCCTCCTCCTCTTTCTCCTCCTCCTCAGGGCTCCAGTCAGGCCGAGCCGCTCCGCTCACG
Seq A exon
AAAGGCAAGCTGAGATACAACTTGCTGCTTTTTGTGGTCACATG
Seq C2 exon
AAAAAGGGAATACATCGTTGCACCAAATGCAGACTGCAGTTTTTGACATGCAAGGAAAAAATGGATCACAAGACTCAACATCACCGAACATTTGTAAAACCCAAGCAACTGGAAGGACTTCCCCCTGGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX1-1/27=C1-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.403
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTCCTCTTTCTCCTCC
R:
TCGGTGATGTTGAGTCTTGTGA
Band lengths:
147-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types