MmuEX0053165 @ mm9
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72122706-72143129:+
Coord C1 exon
chr9:72122706-72122836
Coord A exon
chr9:72133594-72133867
Coord C2 exon
chr9:72143086-72143129
Length
274 bp
Sequences
Splice sites
3' ss Seq
GCCATCTGATTTTTCTCTAGTGC
3' ss Score
7.97
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGCGCCCAGCAGCCCCGCTCCGCGATGGGAGCCGGAGCGGCCTCGGCGTACACAGCCCGCGCTCCTCCCTCGCCTCCTCCTCTTTCTCCTCCTCCTCAGGGCTCCAGTCAGGCCGAGCCGCTCCGCTCACG
Seq A exon
TGCTACCTGTCCTCGCTATACCTGACTGGAGCCTGTCCTTCCTGTGATCCTGGCTGTGTCAGAACTCCTATGAGTTCAGCTGTCTCTGGGGTCCTGTGATTCTGTTATCTTGGGATCCTGAGATCCTGGGTGTGTCAGAGCTCCGGAAGTCAAGCTGCCTCTGGGATCCTGAGATCCTGGTGTGACCAAGCTCCTGAGATCCTATGATCCTGGGCGTGTTAAAATGGAGCTTCCTCTGGATGTTGTGGGACTGGCTGCAGAATTTGAGCCCAAG
Seq C2 exon
AAAGGCAAGCTGAGATACAACTTGCTGCTTTTTGTGGTCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGCGTACACAGCCC
R:
CATGTGACCACAAAAAGCAGCA
Band lengths:
135-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: