Special

MmuEX0053192 @ mm9

Exon Skipping

Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72155758-72160055:+
Coord C1 exon
chr9:72155758-72155875
Coord A exon
chr9:72157059-72157213
Coord C2 exon
chr9:72159885-72160055
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATATCTTGTTAATAAAATAGGTA
3' ss Score
4.54
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGTTATGTAACAAATTCACCAAGAGTTCTGTCTAATAACTCTTCAGAGTTACTGTTTGACTTGACCCAGGATACAGGATTATCACATTACCAGGGGGGACCGACACTTTCTATTGCAG
Seq A exon
GTACAAGCGAAAAGAAACGGAGAAAAAATATTTGTATTAAATCTGGCATTAGGAAGCTCATAGACTTTACTCATAGGAAAAGTCTGCAGTCTTGAAACTTCTGGGAAGAAAGAAACAATAAAGACTCCTATTCTCCCTCTCAGCTTTCTACTACA
Seq C2 exon
GTTTGAATGAAACTTCATTTTTATCAAAACGTCCTTCTGGTTCTGACATAAGCAGTGTTAACCCAAAAAAGCCTAAACCCAGTGAAAATACTTCTGGAATAGATGCCTCTTCTGTAATCTCTTCAGAAAAGTCCCCATCAGTGATATCTCTCCAAGTGGTGCCATCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX1-8/27=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.268 A=0.065 C2=0.483
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF138361=DUF4195=FE(36.1=100)

							
A:
PF138361=DUF4195=PD(10.2=43.8)

							
C2:
PF138361=DUF4195=FE(52.8=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000096175f3841A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000096175





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000043919, ENSMUSP00000055943, ENSMUSP00000096175f3842A, ENSMUSP00000096175f3843A, ENSMUSP00000096175f3844A, ENSMUSP00000096175f3845A
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr15:56984222-56984380 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr10:53762154-53762300 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CAGAGTTACTGTTTGACTTGACCCA

				
R: 
CGATGGCACCACTTGGAGAGA

				
Band lengths: 
242-397

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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