MmuEX0053192 @ mm10
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72307951-72312248:+
Coord C1 exon
chr9:72307951-72308068
Coord A exon
chr9:72309252-72309406
Coord C2 exon
chr9:72312078-72312248
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATATCTTGTTAATAAAATAGGTA
3' ss Score
4.54
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGTTATGTAACAAATTCACCAAGAGTTCTGTCTAATAACTCTTCAGAGTTACTGTTTGACTTGACCCAGGATACAGGATTATCACATTACCAGGGGGGACCGACACTTTCTATTGCAG
Seq A exon
GTACAAGCGAAAAGAAACGGAGAAAAAATATTTGTATTAAATCTGGCATTAGGAAGCTCATAGACTTTACTCATAGGAAAAGTCTGCAGTCTTGAAACTTCTGGGAAGAAAGAAACAATAAAGACTCCTATTCTCCCTCTCAGCTTTCTACTACA
Seq C2 exon
GTTTGAATGAAACTTCATTTTTATCAAAACGTCCTTCTGGTTCTGACATAAGCAGTGTTAACCCAAAAAAGCCTAAACCCAGTGAAAATACTTCTGGAATAGATGCCTCTTCTGTAATCTCTTCAGAAAAGTCCCCATCAGTGATATCTCTCCAAGTGGTGCCATCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX3-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=0.079 C2=0.486
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PD(21.3=83.3)
A:
PF138361=DUF4195=PD(10.9=45.5)
C2:
PF138361=DUF4195=FE(30.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTTACTGTTTGACTTGACCCA
R:
CGATGGCACCACTTGGAGAGA
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types