RnoEX0101219 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78888820-78892933:+
Coord C1 exon
chr8:78888820-78888937
Coord A exon
chr8:78890153-78890307
Coord C2 exon
chr8:78892763-78892933
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATATCTTGTTAATAAAATAGGTA
3' ss Score
4.54
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGTTATGTAACAAATTCACCACGAGTTCTATCTAGTAACCCTTCAGAGTTACTGTTTGACTTGACCCAGGATACAGGATTGTCACATTACCAAGGGGGACCAACACTTTCTATTGCAG
Seq A exon
GTACAAGCGAAAAGAAATGGAGAAAAAATATTTGTATTAAGTCTGGCATTAGGAAGCTCATAGACTTTACTCATAGGAAAAGTCTGCAGTCTTGAAACTTCTGGGAAGAAAGAAACAATAAAGACTCCTATTCTCCCTCTCAGCTTTCTACTACA
Seq C2 exon
GTTTGAATGAAACTTCTTTTTTATCAAAACGTCCTTCTGGTTCTGACATAAGCAGTGTTAACCCAAAAAAGCCTAAACCCAATGAAAATATTTCTGGAACAGATGCCTCTTCTGTAGTCTCTTCAGAAAAGTCTCCATCAGTGATGTCTCTCCAAGTGGTGCCATCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.000 C2=0.783
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(21.0=100)
A:
PF138361=DUF4195=PD(12.1=53.1)
C2:
PF138361=DUF4195=FE(30.6=100)
Main Inclusion Isoform:
ENSRNOT00000089335fB16906
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTACTGTTTGACTTGACCCAGG
R:
TTGTGATGGCACCACTTGGAG
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]