Special

MmuEX0053187 @ mm9

Exon Skipping

Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72143782-72149573:+
Coord C1 exon
chr9:72143782-72143842
Coord A exon
chr9:72146509-72146655
Coord C2 exon
chr9:72149508-72149573
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCTTTTAAAAATTAGATA
3' ss Score
4.93
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GTGACAACATATATAAAGTCAGATCTGCAACTTGATGGGAGACAGTTCTTTCAACCAAAAG
Seq A exon
ATAATTTAAAAATGGCAGAACTCTTTATGGAATGTGAAGAAGAGGAGCTAGAGCCATGGCAGAAGAAAGTGAAAGAAGTCGAAGAGGATGATGATGATGAGCCCATCTTTGTTGCAGAGATAGCAAGTTCAAAGCCAGCTATTTCAA
Seq C2 exon
ATATTTTGAACAGAGTTAACCCCAGCTCTCATTCAAGAGGAATAAAGAATGGTATACTCAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX1-3/27=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.251 C2=0.212
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
PF138361=DUF4195=PU(10.2=28.0)

							
C2:
PF138361=DUF4195=PU(3.7=66.7)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000096175





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000055943, ENSMUSP00000096175f3841A, ENSMUSP00000096175f3842A, ENSMUSP00000096175f3843A, ENSMUSP00000096175f3844A, ENSMUSP00000096175f3845A, ENSMUSP00000096175f3846A, ENSMUSP00000096175f3847A
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr15:56704121-56704267 
HIGH PSI
HsaEX6074951
(ZNF280D)
Human
(hg19)
chr15:56996319-56996465 
HIGH PSI
HsaEX6074951
(ZNF280D)
Rat
(rn6)
chr8:78876353-78876499 
HIGH PSI
RnoEX6036454
(Zfp280d)
Cow
(bosTau6)
chr10:53739709-53739855 
HIGH PSI
BtaEX0041216
(ZNF280D)
Chicken
(galGal4)
chr10:7094924-7095072 
Chicken
(galGal3)
chr10:8635760-8635909 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGTCAGATCTGCAACTTGATGGG

				
R: 
ACCATTCTTTATTCCTCTTGAATGAG

				
Band lengths: 
98-245

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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