HsaEX6074951 @ hg19
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56993371-56999504:-
Coord C1 exon
chr15:56999461-56999504
Coord A exon
chr15:56996319-56996465
Coord C2 exon
chr15:56993371-56993436
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTTTTGAAAATTAGGTA
3' ss Score
7.05
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GAAGGAAAACAGAAATAACTTGCTGGCTTGTCTGGAGTCACATG
Seq A exon
GTAATTCAAAAATGGCAGAACTGTTTATGGAATGTGAAGAAGAGGAGCTGGAACCATGGCAGAAGAAAGTAAAAGAAGTTGAGGATGACGATGATGATGAGCCAATCTTTGTTGGCGAGATATCAAGTTCAAAACCAGCAATTTCAA
Seq C2 exon
ATATTTTGAACAGAGTTAACCCCAGCTCATATTCAAGGGGACTAAAGAATGGTGCACTCAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-'3-8,'3-7,5-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.705 C2=0.362
Domain overlap (PFAM):
C1:
NA
A:
PF138361=DUF4195=PU(38.9=28.0)
C2:
PF138361=DUF4195=PD(58.3=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAACAGAAATAACTTGCTGGCT
R:
CTCGACTGAGTGCACCATTCT
Band lengths:
107-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)